RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 RBM27Q9P2N5 1060 aaKnown RBP10.04□□□□□ -0.8
USP54-213ENST00000481991 PAPPA2Q9BXP8 1791 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 RIPK4P57078 832 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 LDLRAD1Q5T700 205 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 RIC3Q7Z5B4 369 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 APOBEC3FQ8IUX4 373 aaKnown RBP10.03□□□□□ -0.8
USP54-213ENST00000481991 KIAA0825Q8IV33 1275 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 PLBD2Q8NHP8 589 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 ARMC5Q96C12 935 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 OTUD5Q96G74 571 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 CHPF2Q9P2E5 772 aa10.03□□□□□ -0.8
USP54-213ENST00000481991 HSP90B1P14625 803 aaKnown RBP10.02□□□□□ -0.81
USP54-213ENST00000481991 NEUROD2Q15784 382 aa10.02□□□□□ -0.81
USP54-213ENST00000481991 CCDC152Q4G0S7 254 aa10.02□□□□□ -0.81
USP54-213ENST00000481991 TTLL5Q6EMB2 1281 aa10.02□□□□□ -0.81
USP54-213ENST00000481991 CCER1Q8TC90 406 aaPredicted RBP10.02□□□□□ -0.81
USP54-213ENST00000481991 SH3TC2Q8TF17 1288 aa10.02□□□□□ -0.81
USP54-213ENST00000481991 WNK4Q96J92 1243 aa10.02□□□□□ -0.81
USP54-213ENST00000481991 DEFB129Q9H1M3 183 aa10.02□□□□□ -0.81
USP54-213ENST00000481991 PTCH2Q9Y6C5 1203 aa10.02□□□□□ -0.81
USP54-213ENST00000481991 DUOX1Q9NRD9 1551 aa10.01□□□□□ -0.81
USP54-213ENST00000481991 DLGAP5Q15398 846 aa10.01□□□□□ -0.81
USP54-213ENST00000481991 KRT24Q2M2I5 525 aa10.01□□□□□ -0.81
USP54-213ENST00000481991 SUPT20HL1Q3ZLR7 823 aa10.01□□□□□ -0.81
USP54-213ENST00000481991 ZNF333Q96JL9 665 aa10.01□□□□□ -0.81
USP54-213ENST00000481991 XDHP47989 1333 aa10.01□□□□□ -0.81
USP54-213ENST00000481991 KIAA0100Q14667 2235 aaKnown RBP10.01□□□□□ -0.81
USP54-213ENST00000481991 F8W031 263 aaPredicted RBP10□□□□□ -0.81
USP54-213ENST00000481991 ZBTB48P10074 688 aaPredicted RBP10□□□□□ -0.81
USP54-213ENST00000481991 IREB2P48200 963 aaKnown RBP10□□□□□ -0.81
USP54-213ENST00000481991 RBM5P52756 815 aaKnown RBP eCLIP10□□□□□ -0.81
USP54-213ENST00000481991 GTF2IP78347 998 aa10□□□□□ -0.81
USP54-213ENST00000481991 KIF22Q14807 665 aa10□□□□□ -0.81
USP54-213ENST00000481991 TAF1CQ15572 869 aaPredicted RBP10□□□□□ -0.81
USP54-213ENST00000481991 DACT2Q5SW24 774 aa10□□□□□ -0.81
USP54-213ENST00000481991 HDGFL1Q5TGJ6 251 aa10□□□□□ -0.81
USP54-213ENST00000481991 ZBTB38Q8NAP3 1195 aaPredicted RBP10□□□□□ -0.81
USP54-213ENST00000481991 MYD88Q99836 296 aa10□□□□□ -0.81
USP54-213ENST00000481991 ISCA1Q9BUE6 129 aa10□□□□□ -0.81
USP54-213ENST00000481991 VEZTQ9HBM0 779 aa10□□□□□ -0.81
USP54-213ENST00000481991 ZFYVE28Q9HCC9 887 aa10□□□□□ -0.81
USP54-213ENST00000481991 BIN2Q9UBW5 565 aaPredicted RBP10□□□□□ -0.81
USP54-213ENST00000481991 LAMB4A4D0S4 1761 aa10□□□□□ -0.81
USP54-213ENST00000481991 ANKRD36CQ5JPF3 1778 aa10□□□□□ -0.81
USP54-213ENST00000481991 LAMB2P55268 1798 aa9.99□□□□□ -0.81
USP54-213ENST00000481991 CLRN2A0PK11 232 aa9.99□□□□□ -0.81
USP54-213ENST00000481991 MYO1BO43795 1136 aa9.99□□□□□ -0.81
USP54-213ENST00000481991 PDE8AO60658 829 aa9.99□□□□□ -0.81
USP54-213ENST00000481991 WDHD1O75717 1129 aaPredicted RBP9.99□□□□□ -0.81
USP54-213ENST00000481991 STRIP1Q5VSL9 837 aa9.99□□□□□ -0.81
USP54-213ENST00000481991 PLEKHF1Q96S99 279 aa9.99□□□□□ -0.81
USP54-213ENST00000481991 PTPN18Q99952 460 aa9.99□□□□□ -0.81
USP54-213ENST00000481991 ELP3Q9H9T3 547 aa9.99□□□□□ -0.81
USP54-213ENST00000481991 SCN9AQ15858 1988 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 USP2O75604 605 aaPredicted RBP9.98□□□□□ -0.81
USP54-213ENST00000481991 KCNJ4P48050 445 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 CAP1Q01518 475 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 GOLGA2Q08379 1002 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 NBPF12Q5TAG4 269 aaPredicted RBP9.98□□□□□ -0.81
USP54-213ENST00000481991 OPTNQ96CV9 577 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 CDC5LQ99459 802 aaKnown RBP9.98□□□□□ -0.81
USP54-213ENST00000481991 HTATIP2Q9BUP3 242 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 COA1Q9GZY4 146 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 HYPKQ9NX55 129 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 DBF4Q9UBU7 674 aaPredicted RBP9.98□□□□□ -0.81
USP54-213ENST00000481991 NR2E3Q9Y5X4 410 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 MYO3BQ8WXR4 1341 aa9.98□□□□□ -0.81
USP54-213ENST00000481991 GJA5P36382 358 aa9.97□□□□□ -0.81
USP54-213ENST00000481991 CCT4P50991 539 aaKnown RBP9.97□□□□□ -0.81
USP54-213ENST00000481991 ANKRD13AQ8IZ07 590 aa9.97□□□□□ -0.81
USP54-213ENST00000481991 MINPP1Q9UNW1 487 aa9.97□□□□□ -0.81
USP54-213ENST00000481991 CLSPNQ9HAW4 1339 aa9.97□□□□□ -0.81
USP54-213ENST00000481991 CCL15-CCL14A0A0B4J2E2 113 aa9.96□□□□□ -0.82
USP54-213ENST00000481991 CCL15Q16663 113 aa9.96□□□□□ -0.82
USP54-213ENST00000481991 TXNRD3Q86VQ6 643 aa9.96□□□□□ -0.82
USP54-213ENST00000481991 PCDHAC2Q9Y5I4 1007 aa9.96□□□□□ -0.82
USP54-213ENST00000481991 MKI67P46013 3256 aaKnown RBP9.96□□□□□ -0.82
USP54-213ENST00000481991 ELL2O00472 640 aaPredicted RBP9.95□□□□□ -0.82
USP54-213ENST00000481991 EVI5O60447 810 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 MMP14P50281 582 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 LMOD3Q0VAK6 560 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 TRIM28Q13263 835 aaKnown RBP9.95□□□□□ -0.82
USP54-213ENST00000481991 MTFR1Q15390 333 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 MAP3K11Q16584 847 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 CFAP100Q494V2 611 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 NKX2-3Q8TAU0 364 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 RAET1EQ8TD07 263 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 LRCH3Q96II8 777 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 ARHGAP39Q9C0H5 1083 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 BABAM1Q9NWV8 329 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 CWC25Q9NXE8 425 aaPredicted RBP9.95□□□□□ -0.82
USP54-213ENST00000481991 STAP2Q9UGK3 403 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 TRIOBPQ9H2D6 2365 aa9.95□□□□□ -0.82
USP54-213ENST00000481991 FMNL1O95466 1100 aaPredicted RBP9.94□□□□□ -0.82
USP54-213ENST00000481991 PCCAP05165 728 aaPredicted RBP9.94□□□□□ -0.82
USP54-213ENST00000481991 IGHMBP2P38935 993 aaKnown RBP9.94□□□□□ -0.82
USP54-213ENST00000481991 GTF2A2P52657 109 aa9.94□□□□□ -0.82
USP54-213ENST00000481991 RASA3Q14644 834 aa9.94□□□□□ -0.82
USP54-213ENST00000481991 DUSP27Q5VZP5 1158 aa9.94□□□□□ -0.82
USP54-213ENST00000481991 CNKSR2Q8WXI2 1034 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms