RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 TMX4Q9H1E5 349 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-208ENST00000481484 VPS33BQ9H267 617 aa5.4□□□□□ -1.54
VPS13D-208ENST00000481484 DUOX1Q9NRD9 1551 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 PRAMEF22A3QJZ6 481 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 NTSR2O95665 410 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 IARSP41252 1262 aaKnown RBP5.39□□□□□ -1.55
VPS13D-208ENST00000481484 TMPOP42166 694 aaKnown RBP5.39□□□□□ -1.55
VPS13D-208ENST00000481484 RIPK4P57078 832 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 PNMA8AQ86V59 439 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-208ENST00000481484 GPC2Q8N158 579 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 SUPT20HQ8NEM7 779 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 C7orf43Q8WVR3 580 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 JDP2Q8WYK2 163 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 RUNDC1Q96C34 613 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 RBM17Q96I25 401 aaKnown RBP5.39□□□□□ -1.55
VPS13D-208ENST00000481484 CRAMP1Q96RY5 1269 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 PRR14Q9BWN1 585 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 IL21Q9HBE4 155 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 UBN2Q6ZU65 1347 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 SPEF2Q9C093 1822 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 ZNF609O15014 1411 aa5.39□□□□□ -1.55
VPS13D-208ENST00000481484 A0A1B0GUL6 1792 aa5.38□□□□□ -1.55
VPS13D-208ENST00000481484 PPEF1O14829 653 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-208ENST00000481484 SLC10A3P09131 477 aa5.38□□□□□ -1.55
VPS13D-208ENST00000481484 LMOD1P29536 600 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-208ENST00000481484 PIP4K2AP48426 406 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-208ENST00000481484 ZNF34Q8IZ26 560 aa5.38□□□□□ -1.55
VPS13D-208ENST00000481484 ZNF516Q92618 1163 aa5.38□□□□□ -1.55
VPS13D-208ENST00000481484 PHOX2BQ99453 314 aa5.38□□□□□ -1.55
VPS13D-208ENST00000481484 UTP14AQ9BVJ6 771 aaKnown RBP5.38□□□□□ -1.55
VPS13D-208ENST00000481484 ZBTB3Q9H5J0 574 aa5.38□□□□□ -1.55
VPS13D-208ENST00000481484 RRAGCQ9HB90 399 aa5.38□□□□□ -1.55
VPS13D-208ENST00000481484 DDX21Q9NR30 783 aaKnown RBP eCLIP5.38□□□□□ -1.55
VPS13D-208ENST00000481484 SH3TC1Q8TE82 1336 aa5.38□□□□□ -1.55
VPS13D-208ENST00000481484 COL4A5P29400 1685 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 ARAP2Q8WZ64 1704 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 ECM29Q5VYK3 1845 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 FZD9O00144 591 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 CHL1O00533 1208 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 MYL6BP14649 208 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 PRELPP51888 382 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 EIF6P56537 245 aaKnown RBP5.37□□□□□ -1.55
VPS13D-208ENST00000481484 HLFQ16534 295 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 HDGFL1Q5TGJ6 251 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 TTLL7Q6ZT98 887 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 LRP10Q7Z4F1 713 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 NIM1KQ8IY84 436 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 DNAJC5GQ8N7S2 189 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 NLRP3Q96P20 1036 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 THUMPD2Q9BTF0 503 aaKnown RBP5.37□□□□□ -1.55
VPS13D-208ENST00000481484 TAF1DQ9H5J8 278 aaPredicted RBP5.37□□□□□ -1.55
VPS13D-208ENST00000481484 PRKRIP1Q9H875 184 aaPredicted RBP5.37□□□□□ -1.55
VPS13D-208ENST00000481484 IFT57Q9NWB7 429 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 HYPKQ9NX55 129 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 DBF4Q9UBU7 674 aaPredicted RBP5.37□□□□□ -1.55
VPS13D-208ENST00000481484 DAXXQ9UER7 740 aaPredicted RBP5.37□□□□□ -1.55
VPS13D-208ENST00000481484 HACL1Q9UJ83 578 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 RRP7AQ9Y3A4 280 aaKnown RBP5.37□□□□□ -1.55
VPS13D-208ENST00000481484 ABCC4O15439 1325 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 PASKQ96RG2 1323 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 ZNF541Q9H0D2 1346 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 CNTNAP1P78357 1384 aa5.37□□□□□ -1.55
VPS13D-208ENST00000481484 PDE4DIPQ5VU43 2346 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 ACTN4O43707 911 aaKnown RBP5.36□□□□□ -1.55
VPS13D-208ENST00000481484 GPTP24298 496 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 GNAI1P63096 354 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 SLC10A5Q5PT55 438 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 DDX46Q7L014 1031 aaKnown RBP5.36□□□□□ -1.55
VPS13D-208ENST00000481484 NUTM1Q86Y26 1132 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 LARGE2Q8N3Y3 721 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 CCDC24Q8N4L8 307 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 PLBD2Q8NHP8 589 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 RTFDC1Q9BY42 306 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-208ENST00000481484 ZNF277Q9NRM2 450 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-208ENST00000481484 MIS18AQ9NYP9 233 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 ATP6V0A2Q9Y487 856 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 LAMB1P07942 1786 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 ZNF646O15015 1829 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-208ENST00000481484 SCN9AQ15858 1988 aa5.36□□□□□ -1.55
VPS13D-208ENST00000481484 AKAP11Q9UKA4 1901 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 FAM177BA6PVY3 158 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 POTECB2RU33 542 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 IRF6O14896 467 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 PPIP5K2O43314 1243 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 BBOX1O75936 387 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 DDNO94850 711 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-208ENST00000481484 DDX58O95786 925 aaKnown RBP5.35□□□□□ -1.55
VPS13D-208ENST00000481484 EIF2S2P20042 333 aaKnown RBP5.35□□□□□ -1.55
VPS13D-208ENST00000481484 EPHX2P34913 555 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 ZEB1P37275 1124 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-208ENST00000481484 KIAA2012Q0VF49 1180 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 MAP2K5Q13163 448 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 DDX10Q13206 875 aaKnown RBP5.35□□□□□ -1.55
VPS13D-208ENST00000481484 TRIM28Q13263 835 aaKnown RBP5.35□□□□□ -1.55
VPS13D-208ENST00000481484 TCIRG1Q13488 830 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 GRAPQ13588 217 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 SUSD4Q5VX71 490 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 DPP8Q6V1X1 898 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-208ENST00000481484 NLRP10Q86W26 655 aa5.35□□□□□ -1.55
VPS13D-208ENST00000481484 SYNE4Q8N205 404 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms