RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 CCP110O43303 1012 aa21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 UBASH3AP57075 661 aa21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 NAA16Q6N069 864 aaPredicted RBP21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 LGR6Q9HBX8 967 aa21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 PARP3Q9Y6F1 533 aa21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 PEAK1Q9H792 1746 aa21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 SRRTQ9BXP5 876 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 CWC15Q9P013 229 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 KDRP35968 1356 aa21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 CTDNEP1O95476 244 aa21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 PDILTQ8N807 584 aa21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 SUCLG2Q96I99 432 aa21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 MED23Q9ULK4 1368 aa21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 EIF4A1P60842 406 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 DPF2Q92785 391 aa21.75■■□□□ 1.07
CCDC88B-207ENST00000479965 SBNO1A3KN83 1393 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 TPM1P09493 284 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 CASQ1P31415 396 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 NLRP6P59044 892 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 IRX3P78415 501 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 MTX1Q13505 466 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 MUM1L1Q5H9M0 696 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 SMARCC2Q8TAQ2 1214 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 FAM208AQ9UK61 1670 aaKnown RBP21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 TUBB4AP04350 444 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 ADAM21Q9UKJ8 722 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 CLIC4Q9Y696 253 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 C3P01024 1663 aa21.74■■□□□ 1.07
CCDC88B-207ENST00000479965 PPP2R3AQ06190 1150 aa21.73■■□□□ 1.07
CCDC88B-207ENST00000479965 PARD6BQ9BYG5 372 aa21.73■■□□□ 1.07
CCDC88B-207ENST00000479965 MCM6Q14566 821 aa21.73■■□□□ 1.07
CCDC88B-207ENST00000479965 PROSER3Q2NL68 480 aa21.73■■□□□ 1.07
CCDC88B-207ENST00000479965 TSGA10IPQ3SY00 556 aa21.73■■□□□ 1.07
CCDC88B-207ENST00000479965 ADALQ6DHV7 355 aa21.73■■□□□ 1.07
CCDC88B-207ENST00000479965 WDR24Q96S15 920 aa21.73■■□□□ 1.07
CCDC88B-207ENST00000479965 DIP2CQ9Y2E4 1556 aa21.72■■□□□ 1.07
CCDC88B-207ENST00000479965 PFKFB2O60825 505 aa21.72■■□□□ 1.07
CCDC88B-207ENST00000479965 ILDR1Q86SU0 546 aaPredicted RBP21.72■■□□□ 1.07
CCDC88B-207ENST00000479965 ALDH1L1O75891 902 aa21.72■■□□□ 1.07
CCDC88B-207ENST00000479965 TOP1P11387 765 aaKnown RBP21.72■■□□□ 1.07
CCDC88B-207ENST00000479965 C14orf37Q86TY3 774 aa21.72■■□□□ 1.07
CCDC88B-207ENST00000479965 USP6P35125 1406 aa21.72■■□□□ 1.07
CCDC88B-207ENST00000479965 MON2Q7Z3U7 1717 aa21.72■■□□□ 1.07
CCDC88B-207ENST00000479965 STOX1Q6ZVD7 989 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 DDX46Q7L014 1031 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 REXO1L1PQ8IX06 675 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 COL15A1P39059 1388 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 ZNF202O95125 648 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 NCAPHQ15003 741 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 GPR161Q8N6U8 529 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 LLPHQ9BRT6 129 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 U3KPZ7 1027 aaPredicted RBP21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 TMEM232C9JQI7 657 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 ZSCAN12O43309 604 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 NLRP12P59046 1061 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 VPS18Q9P253 973 aa21.71■■□□□ 1.07
CCDC88B-207ENST00000479965 KCNJ6P48051 423 aa21.7■■□□□ 1.06
CCDC88B-207ENST00000479965 RAB11FIP4Q86YS3 637 aa21.7■■□□□ 1.06
CCDC88B-207ENST00000479965 SNRKQ9NRH2 765 aa21.7■■□□□ 1.06
CCDC88B-207ENST00000479965 PPP2R2CQ9Y2T4 447 aa21.7■■□□□ 1.06
CCDC88B-207ENST00000479965 A2ML1A8K2U0 1454 aa21.7■■□□□ 1.06
CCDC88B-207ENST00000479965 RRP15Q9Y3B9 282 aaKnown RBP21.7■■□□□ 1.06
CCDC88B-207ENST00000479965 VWA3AA6NCI4 1184 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 BTBD11A6QL63 1104 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 ATP8B1O43520 1251 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 DHX32Q7L7V1 743 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 GJB4Q9NTQ9 266 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 USP31Q70CQ4 1352 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 H3BQF6 201 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 GRM8O00222 908 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 MARCKSP29966 332 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 KARSQ15046 597 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 USPL1Q5W0Q7 1092 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 LEKR1Q6ZMV7 388 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 DBF4Q9UBU7 674 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 LINC00301Q8NCQ3 95 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 FBXO18Q8NFZ0 1043 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 GOLGA5Q8TBA6 731 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 FUT8Q9BYC5 575 aa21.69■■□□□ 1.06
CCDC88B-207ENST00000479965 PLEKHG3A1L390 1219 aa21.68■■□□□ 1.06
CCDC88B-207ENST00000479965 SPTLC2O15270 562 aa21.68■■□□□ 1.06
CCDC88B-207ENST00000479965 LONRF2Q1L5Z9 754 aa21.68■■□□□ 1.06
CCDC88B-207ENST00000479965 ROBO2Q9HCK4 1378 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 A0A0G2JLW4 131 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 SRLQ86TD4 932 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 UBXN6Q9BZV1 441 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 HDAC5Q9UQL6 1122 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 RIMBP3CA6NJZ7 1639 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 RIMBP3BA6NNM3 1639 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 RIMBP3Q9UFD9 1639 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 PRAMEF22A3QJZ6 481 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 HOXC9P31274 260 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 PSME1Q06323 249 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 DHX8Q14562 1220 aaKnown RBP21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 ATL3Q6DD88 541 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 SYNE3Q6ZMZ3 975 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 DHX58Q96C10 678 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 KAZALD1Q96I82 304 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 DESI2Q9BSY9 194 aa21.67■■□□□ 1.06
CCDC88B-207ENST00000479965 DHX16O60231 1041 aaKnown RBP21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms