RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 TMEM132AQ24JP5 1023 aa8.57□□□□□ -1.04
USP48-208ENST00000479177 BANK1Q8NDB2 785 aa8.57□□□□□ -1.04
USP48-208ENST00000479177 TRPC5Q9UL62 973 aaPredicted RBP8.57□□□□□ -1.04
USP48-208ENST00000479177 C5P01031 1676 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 MAGEB6P1A0A0J9YX57 407 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 ERVV-2B6SEH9 535 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 EXOC5O00471 708 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 RARSP54136 660 aaKnown RBP8.56□□□□□ -1.04
USP48-208ENST00000479177 NBPF14Q5TI25 921 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 SH3RF1Q7Z6J0 888 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 KCTD17Q8N5Z5 321 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 TSPYL6Q8N831 410 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 C8orf58Q8NAV2 365 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 ARMC2Q8NEN0 867 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 DDX54Q8TDD1 881 aaKnown RBP8.56□□□□□ -1.04
USP48-208ENST00000479177 MIS18AQ9NYP9 233 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 SUPT16HQ9Y5B9 1047 aaKnown RBP8.56□□□□□ -1.04
USP48-208ENST00000479177 LAMB4A4D0S4 1761 aa8.56□□□□□ -1.04
USP48-208ENST00000479177 KCPQ6ZWJ8 1503 aa8.55□□□□□ -1.04
USP48-208ENST00000479177 VARSP26640 1264 aaKnown RBP8.55□□□□□ -1.04
USP48-208ENST00000479177 RRP1P56182 461 aaKnown RBP8.55□□□□□ -1.04
USP48-208ENST00000479177 KRT24Q2M2I5 525 aa8.55□□□□□ -1.04
USP48-208ENST00000479177 MARCH10Q8NA82 808 aaPredicted RBP8.55□□□□□ -1.04
USP48-208ENST00000479177 PURBQ96QR8 312 aaKnown RBP8.55□□□□□ -1.04
USP48-208ENST00000479177 HEG1Q9ULI3 1381 aa8.55□□□□□ -1.04
USP48-208ENST00000479177 KAT6BQ8WYB5 2073 aa8.55□□□□□ -1.04
USP48-208ENST00000479177 SOS1Q07889 1333 aaPredicted RBP8.54□□□□□ -1.04
USP48-208ENST00000479177 BCL9O00512 1426 aa8.54□□□□□ -1.04
USP48-208ENST00000479177 BRWD3Q6RI45 1802 aa8.54□□□□□ -1.04
USP48-208ENST00000479177 NHSQ6T4R5 1651 aa8.54□□□□□ -1.04
USP48-208ENST00000479177 BTBD11A6QL63 1104 aa8.54□□□□□ -1.04
USP48-208ENST00000479177 KCNQ3O43525 872 aa8.54□□□□□ -1.04
USP48-208ENST00000479177 VAMP4O75379 141 aa8.54□□□□□ -1.04
USP48-208ENST00000479177 CABP4P57796 275 aa8.54□□□□□ -1.04
USP48-208ENST00000479177 EIF4A1P60842 406 aaKnown RBP8.54□□□□□ -1.04
USP48-208ENST00000479177 TWISTNBQ3B726 338 aaPredicted RBP8.54□□□□□ -1.04
USP48-208ENST00000479177 ZNF772Q68DY9 489 aaPredicted RBP8.54□□□□□ -1.04
USP48-208ENST00000479177 MRPL14Q6P1L8 145 aaKnown RBP8.54□□□□□ -1.04
USP48-208ENST00000479177 BPHLQ86WA6 291 aaPredicted RBP8.54□□□□□ -1.04
USP48-208ENST00000479177 ZNF428Q96B54 188 aa8.54□□□□□ -1.04
USP48-208ENST00000479177 QTRT2Q9H974 415 aaKnown RBP8.54□□□□□ -1.04
USP48-208ENST00000479177 CACNA1FO60840 1977 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 BCAR3O75815 825 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 HOXB7P09629 217 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 VSIG8P0DPA2 414 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 ARID5BQ14865 1188 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 ALDH1L2Q3SY69 923 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 PDXDC2PQ6P474 469 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 NFATC2IPQ8NCF5 419 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 SSH1Q8WYL5 1049 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 C1QTNF2Q9BXJ5 285 aa8.53□□□□□ -1.04
USP48-208ENST00000479177 SBF2Q86WG5 1849 aa8.52□□□□□ -1.04
USP48-208ENST00000479177 CICQ96RK0 1608 aaPredicted RBP8.52□□□□□ -1.05
USP48-208ENST00000479177 ELL2O00472 640 aaPredicted RBP8.52□□□□□ -1.05
USP48-208ENST00000479177 KCNMA1Q12791 1236 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 NNTQ13423 1086 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 SLC39A6Q13433 755 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 ZNF790Q6PG37 636 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 FAM174AQ8TBP5 190 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 ARHGAP9Q9BRR9 750 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 BCL2L13Q9BXK5 485 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 SMC4Q9NTJ3 1288 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 TMOD3Q9NYL9 352 aa8.52□□□□□ -1.05
USP48-208ENST00000479177 NEFLP07196 543 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 TIMP2P16035 220 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 MCM6Q14566 821 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 ERFEQ4G0M1 354 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 SEPT12Q8IYM1 358 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 TTC5Q8N0Z6 440 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 PIGBQ92521 554 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 GPKOWQ92917 476 aaPredicted RBP eCLIP8.51□□□□□ -1.05
USP48-208ENST00000479177 TBC1D2BQ9UPU7 963 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 BTAF1O14981 1849 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 RGS12O14924 1447 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 TJP1Q07157 1748 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 KIF16BQ96L93 1317 aa8.51□□□□□ -1.05
USP48-208ENST00000479177 PLIN1O60240 522 aa8.5□□□□□ -1.05
USP48-208ENST00000479177 GIGYF1O75420 1035 aaPredicted RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 RBM6P78332 1123 aaKnown RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 IRX6P78412 446 aaPredicted RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 ZNF496Q96IT1 587 aaPredicted RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 FMNL2Q96PY5 1086 aa8.5□□□□□ -1.05
USP48-208ENST00000479177 KLF16Q9BXK1 252 aaPredicted RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 RGS17Q9UGC6 210 aaPredicted RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 N4BP2Q86UW6 1770 aaPredicted RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 ZC3H4Q9UPT8 1303 aaKnown RBP8.5□□□□□ -1.05
USP48-208ENST00000479177 ZNF831Q5JPB2 1677 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 TCERG1O14776 1098 aaKnown RBP8.49□□□□□ -1.05
USP48-208ENST00000479177 FBXO45P0C2W1 286 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 GRM5P41594 1212 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 WDR4P57081 412 aaKnown RBP8.49□□□□□ -1.05
USP48-208ENST00000479177 HDGFL1Q5TGJ6 251 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 ADAM32Q8TC27 787 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 ACSBG1Q96GR2 724 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 CDK15Q96Q40 435 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 ATG3Q9NT62 314 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 ASAP1Q9ULH1 1129 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 GTF3C3Q9Y5Q9 886 aa8.49□□□□□ -1.05
USP48-208ENST00000479177 PRAMEF22A3QJZ6 481 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms