RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 SKIP12755 728 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 GTF2IP78347 998 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 FOXK2Q01167 660 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 KCNMA1Q12791 1236 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 NEUROD1Q13562 356 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 HOMEZQ8IX15 550 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 WHAMMQ8TF30 809 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 CFHR5Q9BXR6 569 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 DNAAF2Q9NVR5 837 aaKnown RBP5.96□□□□□ -1.46
VPS13D-206ENST00000476045 USP6P35125 1406 aa5.96□□□□□ -1.46
VPS13D-206ENST00000476045 LTN1O94822 1766 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 ROCK2O75116 1388 aaKnown RBP5.95□□□□□ -1.46
VPS13D-206ENST00000476045 USP17L3A6NCW0 530 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 USP17L4A6NCW7 530 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 A6NJY4 79 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 ATP9BO43861 1147 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 MSX1P28360 303 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 SF3B2Q13435 895 aaKnown RBP5.95□□□□□ -1.46
VPS13D-206ENST00000476045 NUP188Q5SRE5 1749 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 TMEM214Q6NUQ4 689 aaKnown RBP5.95□□□□□ -1.46
VPS13D-206ENST00000476045 USP17L2Q6R6M4 530 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 SSH2Q76I76 1423 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 USP17L1Q7RTZ2 530 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 PMFBP1Q8TBY8 1022 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 GTPBP3Q969Y2 492 aaKnown RBP5.95□□□□□ -1.46
VPS13D-206ENST00000476045 NUDT16Q96DE0 195 aaKnown RBP5.95□□□□□ -1.46
VPS13D-206ENST00000476045 GAS2L1Q99501 681 aaPredicted RBP5.95□□□□□ -1.46
VPS13D-206ENST00000476045 HIRIP3Q9BW71 556 aaPredicted RBP5.95□□□□□ -1.46
VPS13D-206ENST00000476045 PRDM11Q9NQV5 511 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 ZDHHC3Q9NYG2 299 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 SBF2Q86WG5 1849 aa5.95□□□□□ -1.46
VPS13D-206ENST00000476045 KIAA0232Q92628 1395 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 NINLQ9Y2I6 1382 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 COL18A1P39060 1754 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 M0R2N6 131 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 DKK1O94907 266 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 GTF2E1P29083 439 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-206ENST00000476045 FOXR1Q6PIV2 292 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 RIPOR1Q6ZS17 1223 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 TBC1D9Q6ZT07 1266 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 TRIM50Q86XT4 487 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 CLUAP1Q96AJ1 413 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 TRERF1Q96PN7 1200 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 ZNF358Q9NW07 568 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 SCHIP1Q9P0W5 487 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-206ENST00000476045 USP3Q9Y6I4 520 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 COL5A2P05997 1499 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-206ENST00000476045 SPATA31A5Q5VU36 1347 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 EVC2Q86UK5 1308 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 SPATA31A7Q8IWB4 1347 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 NFAT5O94916 1531 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 PEAK1Q9H792 1746 aa5.94□□□□□ -1.46
VPS13D-206ENST00000476045 CPSF1Q10570 1443 aaKnown RBP5.93□□□□□ -1.46
VPS13D-206ENST00000476045 GPR25O00155 361 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 BACH1O14867 736 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 ZBTB7BO15156 539 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-206ENST00000476045 CELA2BP08218 269 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-206ENST00000476045 LYPD4Q6UWN0 246 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 KRT27Q7Z3Y8 459 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 NLRP8Q86W28 1048 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 SIX5Q8N196 739 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 NIFKQ9BYG3 293 aaKnown RBP5.93□□□□□ -1.46
VPS13D-206ENST00000476045 ATXN7L1Q9ULK2 861 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-206ENST00000476045 ADAMTS8Q9UP79 889 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 KIAA1024Q9UPX6 916 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 CCDC9Q9Y3X0 531 aaKnown RBP5.93□□□□□ -1.46
VPS13D-206ENST00000476045 ACEP12821 1306 aa5.93□□□□□ -1.46
VPS13D-206ENST00000476045 OVOS2A0A0G2JMS6 1433 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 OVOS2A0A0J9YW53 1432 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 CRB1P82279 1406 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 OVOS2Q6IE36 1432 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 CAMTA1Q9Y6Y1 1673 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 CENPBP07199 599 aaPredicted RBP5.92□□□□□ -1.46
VPS13D-206ENST00000476045 PHKA2P46019 1235 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 BAG6P46379 1132 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 PLA2G4AP47712 749 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 SRPK2P78362 688 aaKnown RBP5.92□□□□□ -1.46
VPS13D-206ENST00000476045 CLDN10P78369 228 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 HDGFL1Q5TGJ6 251 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 SVOPQ8N4V2 548 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 GLMNQ92990 594 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 CDK19Q9BWU1 502 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 GPAMQ9HCL2 828 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 BTG4Q9NY30 223 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 GPC6Q9Y625 555 aaPredicted RBP5.92□□□□□ -1.46
VPS13D-206ENST00000476045 RGPD5Q99666 1765 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 SPATA31A1Q5TZJ5 1347 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 TTC21AQ8NDW8 1320 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 KIF20BQ96Q89 1820 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 AATKQ6ZMQ8 1374 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 TONSLQ96HA7 1378 aa5.92□□□□□ -1.46
VPS13D-206ENST00000476045 NHSQ6T4R5 1651 aa5.91□□□□□ -1.46
VPS13D-206ENST00000476045 FAM83GA6ND36 823 aa5.91□□□□□ -1.46
VPS13D-206ENST00000476045 RNF225M0QZC1 329 aaPredicted RBP5.91□□□□□ -1.46
VPS13D-206ENST00000476045 MAP2K3P46734 347 aa5.91□□□□□ -1.46
VPS13D-206ENST00000476045 ATP1A2P50993 1020 aa5.91□□□□□ -1.46
VPS13D-206ENST00000476045 HIRAP54198 1017 aaPredicted RBP5.91□□□□□ -1.46
VPS13D-206ENST00000476045 TEAD4Q15561 434 aa5.91□□□□□ -1.46
VPS13D-206ENST00000476045 EFHC2Q5JST6 749 aa5.91□□□□□ -1.46
VPS13D-206ENST00000476045 SAMD5Q5TGI4 173 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms