RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CCL5P13501 91 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 MAGEA10P43363 369 aaPredicted RBP6.55□□□□□ -1.36
USP4-209ENST00000475873 MAP3K12Q12852 859 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 MAP3K11Q16584 847 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 ARMC9Q7Z3E5 817 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 TDHQ8IZJ6 230 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 AGBL3Q8NEM8 1001 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 BRI3BPQ8WY22 251 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 CELF1Q92879 486 aaKnown RBP6.55□□□□□ -1.36
USP4-209ENST00000475873 SLC10A4Q96EP9 437 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 MXD3Q9BW11 206 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 TMX4Q9H1E5 349 aaPredicted RBP6.55□□□□□ -1.36
USP4-209ENST00000475873 NSFL1CQ9UNZ2 370 aaKnown RBP6.55□□□□□ -1.36
USP4-209ENST00000475873 C6orf229H3BNL8 230 aa6.54□□□□□ -1.36
USP4-209ENST00000475873 TNFRSF10AO00220 468 aa6.54□□□□□ -1.36
USP4-209ENST00000475873 SASH1O94885 1247 aa6.54□□□□□ -1.36
USP4-209ENST00000475873 SYN1P17600 705 aa6.54□□□□□ -1.36
USP4-209ENST00000475873 LACTBP83111 547 aaPredicted RBP6.54□□□□□ -1.36
USP4-209ENST00000475873 GIGYF2Q6Y7W6 1299 aaKnown RBP6.54□□□□□ -1.36
USP4-209ENST00000475873 LRP10Q7Z4F1 713 aa6.54□□□□□ -1.36
USP4-209ENST00000475873 FAM43AQ8N2R8 423 aa6.54□□□□□ -1.36
USP4-209ENST00000475873 MAFAQ8NHW3 353 aaPredicted RBP6.54□□□□□ -1.36
USP4-209ENST00000475873 TBC1D16Q8TBP0 767 aa6.54□□□□□ -1.36
USP4-209ENST00000475873 DIS3LQ8TF46 1054 aaKnown RBP6.54□□□□□ -1.36
USP4-209ENST00000475873 U2AF1L4Q8WU68 220 aaKnown RBP6.54□□□□□ -1.36
USP4-209ENST00000475873 CNKSR2Q8WXI2 1034 aa6.54□□□□□ -1.36
USP4-209ENST00000475873 FAM109BQ6ICB4 259 aaPredicted RBP6.53□□□□□ -1.36
USP4-209ENST00000475873 C7orf61Q8IZ16 206 aa6.53□□□□□ -1.36
USP4-209ENST00000475873 USP38Q8NB14 1042 aa6.53□□□□□ -1.36
USP4-209ENST00000475873 NECTIN2Q92692 538 aa6.53□□□□□ -1.36
USP4-209ENST00000475873 ZNF428Q96B54 188 aa6.53□□□□□ -1.36
USP4-209ENST00000475873 ZBED3Q96IU2 234 aaPredicted RBP6.53□□□□□ -1.36
USP4-209ENST00000475873 TRIM47Q96LD4 638 aa6.53□□□□□ -1.36
USP4-209ENST00000475873 CDX2Q99626 313 aaPredicted RBP6.53□□□□□ -1.36
USP4-209ENST00000475873 RNF208Q9H0X6 261 aa6.53□□□□□ -1.36
USP4-209ENST00000475873 UNC93B1Q9H1C4 597 aa6.53□□□□□ -1.36
USP4-209ENST00000475873 COL3A1P02461 1466 aaPredicted RBP6.53□□□□□ -1.36
USP4-209ENST00000475873 AOX1Q06278 1338 aa6.52□□□□□ -1.37
USP4-209ENST00000475873 GRK4P32298 578 aa6.52□□□□□ -1.37
USP4-209ENST00000475873 NF2P35240 595 aa6.52□□□□□ -1.37
USP4-209ENST00000475873 TAF1CQ15572 869 aaPredicted RBP6.52□□□□□ -1.37
USP4-209ENST00000475873 CDCA8Q53HL2 280 aa6.52□□□□□ -1.37
USP4-209ENST00000475873 DDX46Q7L014 1031 aaKnown RBP6.52□□□□□ -1.37
USP4-209ENST00000475873 PPP1R42Q7Z4L9 355 aa6.52□□□□□ -1.37
USP4-209ENST00000475873 NKX2-3Q8TAU0 364 aa6.52□□□□□ -1.37
USP4-209ENST00000475873 PHACTR3Q96KR7 559 aa6.52□□□□□ -1.37
USP4-209ENST00000475873 UTP14AQ9BVJ6 771 aaKnown RBP6.52□□□□□ -1.37
USP4-209ENST00000475873 RIPOR2Q9Y4F9 1068 aa6.52□□□□□ -1.37
USP4-209ENST00000475873 SGPL1O95470 568 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 MYL6BP14649 208 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 OSBPP22059 807 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 PARP10Q53GL7 1025 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 MCM10Q7L590 875 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 MORC1Q86VD1 984 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 NLRP10Q86W26 655 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 PAWRQ96IZ0 340 aaKnown RBP6.51□□□□□ -1.37
USP4-209ENST00000475873 SRRDQ9UH36 339 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 RRP7AQ9Y3A4 280 aaKnown RBP6.51□□□□□ -1.37
USP4-209ENST00000475873 PCDHAC2Q9Y5I4 1007 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 DNAH12Q6ZR08 3092 aa6.51□□□□□ -1.37
USP4-209ENST00000475873 TLR2O60603 784 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 USP2O75604 605 aaPredicted RBP6.5□□□□□ -1.37
USP4-209ENST00000475873 DCTN1Q14203 1278 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 DACT2Q5SW24 774 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 OTUD7BQ6GQQ9 843 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 KIF6Q6ZMV9 814 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 TMC4Q7Z404 712 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 CDAN1Q8IWY9 1227 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 GAS2L2Q8NHY3 880 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 MYLIPQ8WY64 445 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 SYMPKQ92797 1274 aaKnown RBP6.5□□□□□ -1.37
USP4-209ENST00000475873 OPTNQ96CV9 577 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 THUMPD2Q9BTF0 503 aaKnown RBP6.5□□□□□ -1.37
USP4-209ENST00000475873 UBE2OQ9C0C9 1292 aaKnown RBP6.5□□□□□ -1.37
USP4-209ENST00000475873 DEFB129Q9H1M3 183 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 TTYH1Q9H313 450 aaPredicted RBP6.5□□□□□ -1.37
USP4-209ENST00000475873 ZFYVE28Q9HCC9 887 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 MIS18AQ9NYP9 233 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 PODXL2Q9NZ53 605 aa6.5□□□□□ -1.37
USP4-209ENST00000475873 CCL15-CCL14A0A0B4J2E2 113 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 USP17L3A6NCW0 530 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 USP17L4A6NCW7 530 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 UFL1O94874 794 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 ARHGEF6Q15052 776 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 PDIA6Q15084 440 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 CCL15Q16663 113 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 PROSER3Q2NL68 480 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 TJAP1Q5JTD0 557 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 NBPF12Q5TAG4 269 aaPredicted RBP6.49□□□□□ -1.37
USP4-209ENST00000475873 C17orf99Q6UX52 265 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 USP17L1Q7RTZ2 530 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 APOBEC3FQ8IUX4 373 aaKnown RBP6.49□□□□□ -1.37
USP4-209ENST00000475873 EYA3Q99504 573 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 ZC3H12CQ9C0D7 883 aaKnown RBP6.49□□□□□ -1.37
USP4-209ENST00000475873 CRISPLD2Q9H0B8 497 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 PANK3Q9H999 370 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 ELP3Q9H9T3 547 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 GABRQQ9UN88 632 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 XIRP2A4UGR9 3374 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 ADGRA2Q96PE1 1338 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms