RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KIF4BQ2VIQ3 1234 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 DACT2Q5SW24 774 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 DCAF8Q5TAQ9 597 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 CDC37L1Q7L3B6 337 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 USP48Q86UV5 1035 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 AGBL3Q8NEM8 1001 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 SUCLG2Q96I99 432 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 SRCIN1Q9C0H9 1055 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 USP17L3A6NCW0 530 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 USP17L4A6NCW7 530 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 FOXN1O15353 648 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 USP17L1Q7RTZ2 530 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 SAPCD2Q86UD0 394 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 ZNF594Q96JF6 807 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-204ENST00000475218 MPHOSPH8Q99549 860 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 ADM5C9JUS6 153 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 TAF5LO75529 589 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 IFIT5Q13325 482 aaKnown RBP17.89■□□□□ 0.45
UPF3A-204ENST00000475218 CYP4F22Q6NT55 531 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 HELBQ8NG08 1087 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-204ENST00000475218 ANKRD2Q9GZV1 360 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 WBP1LQ9NX94 342 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 COA1Q9GZY4 146 aa17.88■□□□□ 0.45
UPF3A-204ENST00000475218 KRT26Q7Z3Y9 468 aa17.87■□□□□ 0.45
UPF3A-204ENST00000475218 CAPNS2Q96L46 248 aa17.87■□□□□ 0.45
UPF3A-204ENST00000475218 GGA3Q9NZ52 723 aa17.87■□□□□ 0.45
UPF3A-204ENST00000475218 C9orf78Q9NZ63 289 aaPredicted RBP17.87■□□□□ 0.45
UPF3A-204ENST00000475218 ZNF408Q9H9D4 720 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 CHMP3Q9Y3E7 222 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 PTPRCP08575 1304 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 USP17L8P0C7I0 530 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 C15orf52Q6ZUT6 534 aaKnown RBP17.86■□□□□ 0.45
UPF3A-204ENST00000475218 ANKRD44Q8N8A2 993 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 STRIP1Q5VSL9 837 aa17.85■□□□□ 0.45
UPF3A-204ENST00000475218 MYOZ2Q9NPC6 264 aa17.85■□□□□ 0.45
UPF3A-204ENST00000475218 AOC2O75106 756 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 SCARF1Q14162 830 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 RABL6Q3YEC7 729 aaPredicted RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 PUS3Q9BZE2 481 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 BICC1Q9H694 974 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 CD209Q9NNX6 404 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 CCDC57Q2TAC2 916 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 ALDH1L2Q3SY69 923 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 ANGEL2Q5VTE6 544 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 DCPSQ96C86 337 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 HHIPL1Q96JK4 782 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 USP44Q9H0E7 712 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 SCAF8Q9UPN6 1271 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 LDHAL6AQ6ZMR3 332 aa17.83■□□□□ 0.44
UPF3A-204ENST00000475218 CERS5Q8N5B7 392 aa17.83■□□□□ 0.44
UPF3A-204ENST00000475218 GTF2IP78347 998 aa17.82■□□□□ 0.44
UPF3A-204ENST00000475218 NBPF9Q3BBW0 867 aa17.82■□□□□ 0.44
UPF3A-204ENST00000475218 TTLL5Q6EMB2 1281 aa17.82■□□□□ 0.44
UPF3A-204ENST00000475218 KCNJ4P48050 445 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 GRM1Q13255 1194 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 PAXIP1Q6ZW49 1069 aaPredicted RBP17.81■□□□□ 0.44
UPF3A-204ENST00000475218 FBXW7Q969H0 707 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 RIPOR2Q9Y4F9 1068 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 ECE1P42892 770 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 CDCA5Q96FF9 252 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 ZIC5Q96T25 663 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 SMC4Q9NTJ3 1288 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 WNT10BO00744 389 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 HSPA8P11142 646 aaKnown RBP17.8■□□□□ 0.44
UPF3A-204ENST00000475218 IL1R1P14778 569 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 SULF1Q8IWU6 871 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 ZBED3Q96IU2 234 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-204ENST00000475218 CNNM1Q9NRU3 951 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 MYO3BQ8WXR4 1341 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 PITPNM2Q9BZ72 1349 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 PLIN1O60240 522 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 HUNKP57058 714 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 TAF7LQ5H9L4 462 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 KIAA0825Q8IV33 1275 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 GBA2Q9HCG7 927 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-204ENST00000475218 FAM155AB1AL88 458 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-204ENST00000475218 CTCFP49711 727 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-204ENST00000475218 LBX1P52954 281 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 MAP2K1Q02750 393 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-204ENST00000475218 LRRC24Q50LG9 513 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 SASH1O94885 1247 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 MAP2K2P36507 400 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 BRPF1P55201 1214 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-204ENST00000475218 TNS4Q8IZW8 715 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 KLHDC4Q8TBB5 520 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 PRDM10Q9NQV6 1147 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 NOB1Q9ULX3 412 aaKnown RBP17.78■□□□□ 0.44
UPF3A-204ENST00000475218 PCDHAC2Q9Y5I4 1007 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 CT47B1P0C2W7 299 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-204ENST00000475218 PRAMEF18Q5VWM3 479 aa17.77■□□□□ 0.44
UPF3A-204ENST00000475218 MIER1Q8N108 512 aa17.77■□□□□ 0.44
UPF3A-204ENST00000475218 VGLL2Q8N8G2 317 aa17.77■□□□□ 0.44
UPF3A-204ENST00000475218 AIDAQ96BJ3 306 aa17.77■□□□□ 0.44
UPF3A-204ENST00000475218 AOX1Q06278 1338 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 RFX5P48382 616 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-204ENST00000475218 RARSP54136 660 aaKnown RBP17.76■□□□□ 0.43
UPF3A-204ENST00000475218 OGFOD1Q8N543 542 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 JAG2Q9Y219 1238 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 GYG1P46976 350 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 UBE4AQ14139 1066 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms