RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 SAMD7Q7Z3H4 446 aa13.27□□□□□ -0.29
COL4A1-203ENST00000474391 ARHGAP45Q92619 1136 aa13.27□□□□□ -0.29
COL4A1-203ENST00000474391 API5Q9BZZ5 524 aaKnown RBP13.27□□□□□ -0.29
COL4A1-203ENST00000474391 A0A1B0GUL6 1792 aa13.27□□□□□ -0.29
COL4A1-203ENST00000474391 PCNTO95613 3336 aa13.26□□□□□ -0.29
COL4A1-203ENST00000474391 ZNF646O15015 1829 aaPredicted RBP13.26□□□□□ -0.29
COL4A1-203ENST00000474391 TAF5LO75529 589 aa13.26□□□□□ -0.29
COL4A1-203ENST00000474391 CNTNAP1P78357 1384 aa13.26□□□□□ -0.29
COL4A1-203ENST00000474391 HNRNPUQ00839 825 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL4A1-203ENST00000474391 TAF7LQ5H9L4 462 aa13.26□□□□□ -0.29
COL4A1-203ENST00000474391 DACT2Q5SW24 774 aa13.26□□□□□ -0.29
COL4A1-203ENST00000474391 STRIP1Q5VSL9 837 aa13.26□□□□□ -0.29
COL4A1-203ENST00000474391 KIF16BQ96L93 1317 aa13.26□□□□□ -0.29
COL4A1-203ENST00000474391 SNAP23O00161 211 aa13.25□□□□□ -0.29
COL4A1-203ENST00000474391 TRAF5O00463 557 aa13.25□□□□□ -0.29
COL4A1-203ENST00000474391 KCNJ4P48050 445 aa13.25□□□□□ -0.29
COL4A1-203ENST00000474391 FMR1Q06787 632 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL4A1-203ENST00000474391 TBC1D10BQ4KMP7 808 aaPredicted RBP13.25□□□□□ -0.29
COL4A1-203ENST00000474391 CST9Q5W186 159 aa13.25□□□□□ -0.29
COL4A1-203ENST00000474391 CDC37L1Q7L3B6 337 aa13.25□□□□□ -0.29
COL4A1-203ENST00000474391 HELBQ8NG08 1087 aaPredicted RBP13.25□□□□□ -0.29
COL4A1-203ENST00000474391 CNNM1Q9NRU3 951 aa13.25□□□□□ -0.29
COL4A1-203ENST00000474391 RIPOR2Q9Y4F9 1068 aa13.25□□□□□ -0.29
COL4A1-203ENST00000474391 MYO3BQ8WXR4 1341 aa13.24□□□□□ -0.29
COL4A1-203ENST00000474391 RASSF10A6NK89 507 aa13.24□□□□□ -0.29
COL4A1-203ENST00000474391 USP17L8P0C7I0 530 aa13.24□□□□□ -0.29
COL4A1-203ENST00000474391 GLIS2Q9BZE0 524 aaPredicted RBP13.24□□□□□ -0.29
COL4A1-203ENST00000474391 PUS3Q9BZE2 481 aaKnown RBP13.24□□□□□ -0.29
COL4A1-203ENST00000474391 CD209Q9NNX6 404 aa13.24□□□□□ -0.29
COL4A1-203ENST00000474391 MKRN1Q9UHC7 482 aaKnown RBP13.24□□□□□ -0.29
COL4A1-203ENST00000474391 ZBED9Q6R2W3 1325 aa13.23□□□□□ -0.29
COL4A1-203ENST00000474391 MROH5Q6ZUA9 1318 aa13.23□□□□□ -0.29
COL4A1-203ENST00000474391 IL1R1P14778 569 aa13.23□□□□□ -0.29
COL4A1-203ENST00000474391 MMP14P50281 582 aa13.23□□□□□ -0.29
COL4A1-203ENST00000474391 UBE4AQ14139 1066 aa13.23□□□□□ -0.29
COL4A1-203ENST00000474391 KIF4BQ2VIQ3 1234 aa13.23□□□□□ -0.29
COL4A1-203ENST00000474391 INTS3Q68E01 1043 aaKnown RBP13.23□□□□□ -0.29
COL4A1-203ENST00000474391 RFX5P48382 616 aaPredicted RBP13.22□□□□□ -0.29
COL4A1-203ENST00000474391 RBM26Q5T8P6 1007 aaKnown RBP13.22□□□□□ -0.29
COL4A1-203ENST00000474391 TTLL5Q6EMB2 1281 aa13.22□□□□□ -0.29
COL4A1-203ENST00000474391 VGLL2Q8N8G2 317 aa13.22□□□□□ -0.29
COL4A1-203ENST00000474391 MXD3Q9BW11 206 aa13.22□□□□□ -0.29
COL4A1-203ENST00000474391 MYOZ2Q9NPC6 264 aa13.22□□□□□ -0.29
COL4A1-203ENST00000474391 TRPM7Q96QT4 1865 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 IPO8O15397 1037 aaKnown RBP13.21□□□□□ -0.29
COL4A1-203ENST00000474391 PLIN1O60240 522 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 BCAR3O75815 825 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 UBTFL1P0CB47 393 aaPredicted RBP13.21□□□□□ -0.29
COL4A1-203ENST00000474391 VEGFBP49765 207 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 GTF2IP78347 998 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 DEFB115Q30KQ5 88 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 LRRC24Q50LG9 513 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 ZNF804AQ7Z570 1209 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 USP48Q86UV5 1035 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 TLL2Q9Y6L7 1015 aa13.21□□□□□ -0.29
COL4A1-203ENST00000474391 CELF2O95319 508 aaKnown RBP13.2□□□□□ -0.3
COL4A1-203ENST00000474391 TRIM27P14373 513 aa13.2□□□□□ -0.3
COL4A1-203ENST00000474391 PTPN12Q05209 780 aaKnown RBP13.2□□□□□ -0.3
COL4A1-203ENST00000474391 SCARF1Q14162 830 aa13.2□□□□□ -0.3
COL4A1-203ENST00000474391 ATF7IPQ6VMQ6 1270 aa13.2□□□□□ -0.3
COL4A1-203ENST00000474391 KRT26Q7Z3Y9 468 aa13.2□□□□□ -0.3
COL4A1-203ENST00000474391 OGFOD1Q8N543 542 aa13.2□□□□□ -0.3
COL4A1-203ENST00000474391 KLHDC4Q8TBB5 520 aa13.2□□□□□ -0.3
COL4A1-203ENST00000474391 DCPSQ96C86 337 aaKnown RBP13.2□□□□□ -0.3
COL4A1-203ENST00000474391 GGA3Q9NZ52 723 aa13.2□□□□□ -0.3
COL4A1-203ENST00000474391 ABT1Q9ULW3 272 aaKnown RBP13.2□□□□□ -0.3
COL4A1-203ENST00000474391 HDAC5Q9UQL6 1122 aa13.2□□□□□ -0.3
COL4A1-203ENST00000474391 ASTN2O75129 1339 aaPredicted RBP13.19□□□□□ -0.3
COL4A1-203ENST00000474391 PITPNM2Q9BZ72 1349 aa13.19□□□□□ -0.3
COL4A1-203ENST00000474391 SASH1O94885 1247 aa13.19□□□□□ -0.3
COL4A1-203ENST00000474391 PDE8BO95263 885 aa13.19□□□□□ -0.3
COL4A1-203ENST00000474391 FKBP1AP62942 108 aaKnown RBP13.19□□□□□ -0.3
COL4A1-203ENST00000474391 SAPCD2Q86UD0 394 aa13.19□□□□□ -0.3
COL4A1-203ENST00000474391 CERS5Q8N5B7 392 aa13.19□□□□□ -0.3
COL4A1-203ENST00000474391 TDRD7Q8NHU6 1098 aaKnown RBP13.19□□□□□ -0.3
COL4A1-203ENST00000474391 HHIPL1Q96JK4 782 aa13.19□□□□□ -0.3
COL4A1-203ENST00000474391 FAM84BQ96KN1 310 aaPredicted RBP13.19□□□□□ -0.3
COL4A1-203ENST00000474391 MEIS3Q99687 375 aa13.19□□□□□ -0.3
COL4A1-203ENST00000474391 FBXO3Q9UK99 471 aa13.19□□□□□ -0.3
COL4A1-203ENST00000474391 FAM205AQ6ZU69 1335 aa13.18□□□□□ -0.3
COL4A1-203ENST00000474391 ADM5C9JUS6 153 aa13.18□□□□□ -0.3
COL4A1-203ENST00000474391 EYA2O00167 538 aa13.18□□□□□ -0.3
COL4A1-203ENST00000474391 HIBADHP31937 336 aaKnown RBP13.18□□□□□ -0.3
COL4A1-203ENST00000474391 METTL24Q5JXM2 366 aa13.18□□□□□ -0.3
COL4A1-203ENST00000474391 ANGEL2Q5VTE6 544 aaKnown RBP13.18□□□□□ -0.3
COL4A1-203ENST00000474391 DLK2Q6UY11 383 aa13.18□□□□□ -0.3
COL4A1-203ENST00000474391 KIAA0825Q8IV33 1275 aa13.18□□□□□ -0.3
COL4A1-203ENST00000474391 FBXW7Q969H0 707 aa13.18□□□□□ -0.3
COL4A1-203ENST00000474391 ZBED3Q96IU2 234 aaPredicted RBP13.18□□□□□ -0.3
COL4A1-203ENST00000474391 LRRFIP2Q9Y608 721 aaKnown RBP13.18□□□□□ -0.3
COL4A1-203ENST00000474391 WDR33Q9C0J8 1336 aaKnown RBP13.17□□□□□ -0.3
COL4A1-203ENST00000474391 WNT10BO00744 389 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 CIAO1O76071 339 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 GNAI3P08754 354 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 HSPA1AP0DMV8 641 aaKnown RBP13.17□□□□□ -0.3
COL4A1-203ENST00000474391 HSPA1BP0DMV9 641 aaKnown RBP13.17□□□□□ -0.3
COL4A1-203ENST00000474391 FGFR2P21802 821 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 GYG1P46976 350 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 MTX1Q13505 466 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 NBPF9Q3BBW0 867 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms