RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 HIRAP54198 1017 aaPredicted RBP18.95■□□□□ 0.62
LIMS1-212ENST00000474038 LDHAL6AQ6ZMR3 332 aa18.95■□□□□ 0.62
LIMS1-212ENST00000474038 MICALL2Q8IY33 904 aa18.95■□□□□ 0.62
LIMS1-212ENST00000474038 DZIP1LQ8IYY4 767 aaKnown RBP18.95■□□□□ 0.62
LIMS1-212ENST00000474038 HDAC5Q9UQL6 1122 aa18.95■□□□□ 0.62
LIMS1-212ENST00000474038 G3V3G9 751 aa18.94■□□□□ 0.62
LIMS1-212ENST00000474038 DCAF8Q5TAQ9 597 aa18.94■□□□□ 0.62
LIMS1-212ENST00000474038 FTSJ3Q8IY81 847 aaKnown RBP18.94■□□□□ 0.62
LIMS1-212ENST00000474038 HELBQ8NG08 1087 aaPredicted RBP18.94■□□□□ 0.62
LIMS1-212ENST00000474038 PUS3Q9BZE2 481 aaKnown RBP18.94■□□□□ 0.62
LIMS1-212ENST00000474038 CNNM1Q9NRU3 951 aa18.94■□□□□ 0.62
LIMS1-212ENST00000474038 LEMD3Q9Y2U8 911 aa18.94■□□□□ 0.62
LIMS1-212ENST00000474038 H7C1D1 291 aa18.93■□□□□ 0.62
LIMS1-212ENST00000474038 DPF2Q92785 391 aa18.93■□□□□ 0.62
LIMS1-212ENST00000474038 ZNF804BA4D1E1 1349 aa18.93■□□□□ 0.62
LIMS1-212ENST00000474038 MED23Q9ULK4 1368 aa18.93■□□□□ 0.62
LIMS1-212ENST00000474038 TAF5LO75529 589 aa18.92■□□□□ 0.62
LIMS1-212ENST00000474038 RFX5P48382 616 aaPredicted RBP18.92■□□□□ 0.62
LIMS1-212ENST00000474038 SAMD7Q7Z3H4 446 aa18.92■□□□□ 0.62
LIMS1-212ENST00000474038 KLHDC4Q8TBB5 520 aa18.92■□□□□ 0.62
LIMS1-212ENST00000474038 ZNF646O15015 1829 aaPredicted RBP18.91■□□□□ 0.62
LIMS1-212ENST00000474038 SNAP23O00161 211 aa18.91■□□□□ 0.62
LIMS1-212ENST00000474038 EGFRP00533 1210 aa18.91■□□□□ 0.62
LIMS1-212ENST00000474038 VIL1P09327 827 aaKnown RBP18.91■□□□□ 0.62
LIMS1-212ENST00000474038 HSPA1AP0DMV8 641 aaKnown RBP18.91■□□□□ 0.62
LIMS1-212ENST00000474038 HSPA1BP0DMV9 641 aaKnown RBP18.91■□□□□ 0.62
LIMS1-212ENST00000474038 RPS12P25398 132 aaKnown RBP18.91■□□□□ 0.62
LIMS1-212ENST00000474038 PANK1Q8TE04 598 aa18.91■□□□□ 0.62
LIMS1-212ENST00000474038 GLIS2Q9BZE0 524 aaPredicted RBP18.91■□□□□ 0.62
LIMS1-212ENST00000474038 PGAP2Q9UHJ9 254 aa18.91■□□□□ 0.62
LIMS1-212ENST00000474038 RIPOR2Q9Y4F9 1068 aa18.91■□□□□ 0.62
LIMS1-212ENST00000474038 TRPM7Q96QT4 1865 aa18.9■□□□□ 0.62
LIMS1-212ENST00000474038 KLRK1P26718 216 aa18.9■□□□□ 0.62
LIMS1-212ENST00000474038 KCNJ4P48050 445 aa18.9■□□□□ 0.62
LIMS1-212ENST00000474038 VEGFBP49765 207 aa18.9■□□□□ 0.62
LIMS1-212ENST00000474038 TBC1D10BQ4KMP7 808 aaPredicted RBP18.9■□□□□ 0.62
LIMS1-212ENST00000474038 LRRC24Q50LG9 513 aa18.9■□□□□ 0.62
LIMS1-212ENST00000474038 TXNRD3Q86VQ6 643 aa18.9■□□□□ 0.62
LIMS1-212ENST00000474038 ITPRIPQ8IWB1 547 aa18.9■□□□□ 0.62
LIMS1-212ENST00000474038 ABT1Q9ULW3 272 aaKnown RBP18.9■□□□□ 0.62
LIMS1-212ENST00000474038 PLIN1O60240 522 aa18.89■□□□□ 0.61
LIMS1-212ENST00000474038 GNAI2P04899 355 aa18.89■□□□□ 0.61
LIMS1-212ENST00000474038 PTPN12Q05209 780 aaKnown RBP18.89■□□□□ 0.61
LIMS1-212ENST00000474038 RBM26Q5T8P6 1007 aaKnown RBP18.89■□□□□ 0.61
LIMS1-212ENST00000474038 CST9Q5W186 159 aa18.89■□□□□ 0.61
LIMS1-212ENST00000474038 ZC3H15Q8WU90 426 aaKnown RBP18.89■□□□□ 0.61
LIMS1-212ENST00000474038 RASSF10A6NK89 507 aa18.88■□□□□ 0.61
LIMS1-212ENST00000474038 MS4A1P11836 297 aa18.88■□□□□ 0.61
LIMS1-212ENST00000474038 MTX1Q13505 466 aa18.88■□□□□ 0.61
LIMS1-212ENST00000474038 RSBN1LQ6PCB5 846 aaPredicted RBP18.88■□□□□ 0.61
LIMS1-212ENST00000474038 MROH5Q6ZUA9 1318 aa18.88■□□□□ 0.61
LIMS1-212ENST00000474038 IRS2Q9Y4H2 1338 aa18.88■□□□□ 0.61
LIMS1-212ENST00000474038 ZBTB7BO15156 539 aaPredicted RBP18.87■□□□□ 0.61
LIMS1-212ENST00000474038 DEFB115Q30KQ5 88 aa18.87■□□□□ 0.61
LIMS1-212ENST00000474038 C15orf52Q6ZUT6 534 aaKnown RBP18.87■□□□□ 0.61
LIMS1-212ENST00000474038 PODNQ7Z5L7 613 aa18.87■□□□□ 0.61
LIMS1-212ENST00000474038 EYA2O00167 538 aa18.86■□□□□ 0.61
LIMS1-212ENST00000474038 CELF2O95319 508 aaKnown RBP18.86■□□□□ 0.61
LIMS1-212ENST00000474038 KIF4BQ2VIQ3 1234 aa18.86■□□□□ 0.61
LIMS1-212ENST00000474038 DLK2Q6UY11 383 aa18.86■□□□□ 0.61
LIMS1-212ENST00000474038 COA1Q9GZY4 146 aa18.86■□□□□ 0.61
LIMS1-212ENST00000474038 ZNF609O15014 1411 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 USP17L3A6NCW0 530 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 USP17L4A6NCW7 530 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 SRGAP3O43295 1099 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 UBE4AQ14139 1066 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 METTL24Q5JXM2 366 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 CDC37L1Q7L3B6 337 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 USP17L1Q7RTZ2 530 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 ATG9AQ7Z3C6 839 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 USP48Q86UV5 1035 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 VGLL2Q8N8G2 317 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 MXD3Q9BW11 206 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 SIL1Q9H173 461 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 ZNF408Q9H9D4 720 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 COPRSQ9NQ92 184 aa18.85■□□□□ 0.61
LIMS1-212ENST00000474038 PA2G4Q9UQ80 394 aaKnown RBP18.85■□□□□ 0.61
LIMS1-212ENST00000474038 POLR2AP24928 1970 aaKnown RBP18.84■□□□□ 0.61
LIMS1-212ENST00000474038 ASTN2O75129 1339 aaPredicted RBP18.84■□□□□ 0.61
LIMS1-212ENST00000474038 PDE8BO95263 885 aa18.84■□□□□ 0.61
LIMS1-212ENST00000474038 COL13A1Q5TAT6 717 aaPredicted RBP18.84■□□□□ 0.61
LIMS1-212ENST00000474038 PAXIP1Q6ZW49 1069 aaPredicted RBP18.84■□□□□ 0.61
LIMS1-212ENST00000474038 AGBL3Q8NEM8 1001 aa18.84■□□□□ 0.61
LIMS1-212ENST00000474038 FBXW7Q969H0 707 aa18.84■□□□□ 0.61
LIMS1-212ENST00000474038 GMLQ99445 158 aa18.84■□□□□ 0.61
LIMS1-212ENST00000474038 C1orf115Q9H7X2 142 aa18.84■□□□□ 0.61
LIMS1-212ENST00000474038 FBXO3Q9UK99 471 aa18.84■□□□□ 0.61
LIMS1-212ENST00000474038 TLL2Q9Y6L7 1015 aa18.84■□□□□ 0.61
LIMS1-212ENST00000474038 MYH13Q9UKX3 1938 aa18.84■□□□□ 0.61
LIMS1-212ENST00000474038 WDR33Q9C0J8 1336 aaKnown RBP18.83■□□□□ 0.61
LIMS1-212ENST00000474038 CIAO1O76071 339 aa18.83■□□□□ 0.6
LIMS1-212ENST00000474038 ZNF280AP59817 542 aaPredicted RBP18.83■□□□□ 0.6
LIMS1-212ENST00000474038 MVPQ14764 893 aaKnown RBP18.83■□□□□ 0.6
LIMS1-212ENST00000474038 IFFO2Q5TF58 517 aa18.83■□□□□ 0.6
LIMS1-212ENST00000474038 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.83■□□□□ 0.6
LIMS1-212ENST00000474038 COG6Q9Y2V7 657 aa18.83■□□□□ 0.6
LIMS1-212ENST00000474038 PNMA6EA0A0J9YXQ4 647 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 ADM5C9JUS6 153 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 GRM1Q13255 1194 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 PDE3AQ14432 1141 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms