RNA–Protein interactions for RNA: ENST00000473778.5

C9orf3-214, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 2,396 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-214ENST00000473778 GOLPH3LQ9H4A5 285 aa12.91□□□□□ -0.34
C9orf3-214ENST00000473778 DDX19AQ9NUU7 478 aaKnown RBP12.91□□□□□ -0.34
C9orf3-214ENST00000473778 GTF2F1P35269 517 aaKnown RBP eCLIP12.9□□□□□ -0.34
C9orf3-214ENST00000473778 DHX32Q7L7V1 743 aaKnown RBP12.9□□□□□ -0.34
C9orf3-214ENST00000473778 AGXT2Q9BYV1 514 aa12.9□□□□□ -0.34
C9orf3-214ENST00000473778 GPHNQ9NQX3 736 aaPredicted RBP12.9□□□□□ -0.34
C9orf3-214ENST00000473778 MAST3O60307 1309 aa12.9□□□□□ -0.34
C9orf3-214ENST00000473778 SALL1Q9NSC2 1324 aa12.9□□□□□ -0.34
C9orf3-214ENST00000473778 UBR2Q8IWV8 1755 aa12.9□□□□□ -0.34
C9orf3-214ENST00000473778 PARP4Q9UKK3 1724 aaKnown RBP12.9□□□□□ -0.35
C9orf3-214ENST00000473778 PTPDC1A2A3K4 754 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 H3BQV1 296 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 CAPN15O75808 1086 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 ZMYM1Q5SVZ6 1142 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 IFFO2Q5TF58 517 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 PLA2G4DQ86XP0 818 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 PRIMPOLQ96LW4 560 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 ZBTB3Q9H5J0 574 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 TMEM94Q12767 1356 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 E7EWF7 191 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 M0R2C6 588 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 HMGN5P82970 282 aaKnown RBP12.89□□□□□ -0.35
C9orf3-214ENST00000473778 C11orf57Q6ZUT1 292 aaPredicted RBP12.89□□□□□ -0.35
C9orf3-214ENST00000473778 CCDC186Q7Z3E2 898 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 USP28Q96RU2 1077 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 KCPQ6ZWJ8 1503 aa12.89□□□□□ -0.35
C9orf3-214ENST00000473778 A0A1B0GUL7 405 aa12.88□□□□□ -0.35
C9orf3-214ENST00000473778 ZNF165P49910 485 aa12.88□□□□□ -0.35
C9orf3-214ENST00000473778 GUCY1B3Q02153 619 aa12.88□□□□□ -0.35
C9orf3-214ENST00000473778 SNW1Q13573 536 aaKnown RBP12.88□□□□□ -0.35
C9orf3-214ENST00000473778 CCDC144BQ3MJ40 725 aa12.88□□□□□ -0.35
C9orf3-214ENST00000473778 SAMD1Q6SPF0 538 aaPredicted RBP12.88□□□□□ -0.35
C9orf3-214ENST00000473778 CCDC144CPQ8IYA2 1237 aa12.88□□□□□ -0.35
C9orf3-214ENST00000473778 TDRD7Q8NHU6 1098 aaKnown RBP12.88□□□□□ -0.35
C9orf3-214ENST00000473778 ERCC4Q92889 916 aaPredicted RBP12.88□□□□□ -0.35
C9orf3-214ENST00000473778 OSBP2Q969R2 916 aa12.88□□□□□ -0.35
C9orf3-214ENST00000473778 DSCC1Q9BVC3 393 aa12.88□□□□□ -0.35
C9orf3-214ENST00000473778 FDPSP14324 419 aaKnown RBP12.87□□□□□ -0.35
C9orf3-214ENST00000473778 PDIA3P30101 505 aaKnown RBP12.87□□□□□ -0.35
C9orf3-214ENST00000473778 ZNF75DP51815 510 aa12.87□□□□□ -0.35
C9orf3-214ENST00000473778 IQCB1Q15051 598 aa12.87□□□□□ -0.35
C9orf3-214ENST00000473778 ZSCAN16Q9H4T2 348 aaPredicted RBP12.87□□□□□ -0.35
C9orf3-214ENST00000473778 HELLSQ9NRZ9 838 aa12.87□□□□□ -0.35
C9orf3-214ENST00000473778 CWC25Q9NXE8 425 aaPredicted RBP12.87□□□□□ -0.35
C9orf3-214ENST00000473778 TNS3Q68CZ2 1445 aa12.87□□□□□ -0.35
C9orf3-214ENST00000473778 TRIM5Q9C035 493 aa12.87□□□□□ -0.35
C9orf3-214ENST00000473778 RCOR1Q9UKL0 485 aa12.87□□□□□ -0.35
C9orf3-214ENST00000473778 ZHX1Q9UKY1 873 aaPredicted RBP12.87□□□□□ -0.35
C9orf3-214ENST00000473778 EYA2O00167 538 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 IFIT1P09914 478 aaKnown RBP12.86□□□□□ -0.35
C9orf3-214ENST00000473778 ATF3P18847 181 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 ADORA1P30542 326 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 SCARF1Q14162 830 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 HSP90AB3PQ58FF7 597 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 LLPHQ9BRT6 129 aaKnown RBP12.86□□□□□ -0.35
C9orf3-214ENST00000473778 RIOK3O14730 519 aaKnown RBP12.86□□□□□ -0.35
C9orf3-214ENST00000473778 IL15P40933 162 aaPredicted RBP12.86□□□□□ -0.35
C9orf3-214ENST00000473778 ARID5BQ14865 1188 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 OTUD7BQ6GQQ9 843 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 NAA16Q6N069 864 aaPredicted RBP12.86□□□□□ -0.35
C9orf3-214ENST00000473778 PI16Q6UXB8 463 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 MTERF4Q7Z6M4 381 aaKnown RBP12.86□□□□□ -0.35
C9orf3-214ENST00000473778 CCAR1Q8IX12 1150 aaKnown RBP12.86□□□□□ -0.35
C9orf3-214ENST00000473778 ENGASEQ8NFI3 743 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 NKX2-3Q8TAU0 364 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 CCDC85AQ96PX6 553 aaPredicted RBP12.86□□□□□ -0.35
C9orf3-214ENST00000473778 GJB4Q9NTQ9 266 aa12.86□□□□□ -0.35
C9orf3-214ENST00000473778 SHANK3Q9BYB0 1731 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 HMGB1P09429 215 aaKnown RBP12.85□□□□□ -0.35
C9orf3-214ENST00000473778 HAND2P61296 217 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 ZSCAN25Q6NSZ9 544 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 CACTINQ8WUQ7 758 aaKnown RBP12.85□□□□□ -0.35
C9orf3-214ENST00000473778 BCL2L12Q9HB09 334 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 GPR108Q9NPR9 543 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 CFAP45Q9UL16 551 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 NAP1L2Q9ULW6 460 aaPredicted RBP12.85□□□□□ -0.35
C9orf3-214ENST00000473778 PAPPAQ13219 1627 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 CARMIL3Q8ND23 1372 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 SPATA31A3Q5VYP0 1347 aa12.85□□□□□ -0.35
C9orf3-214ENST00000473778 RNF113AO15541 343 aaKnown RBP12.85□□□□□ -0.35
C9orf3-214ENST00000473778 FKBP4Q02790 459 aaKnown RBP eCLIP12.85□□□□□ -0.35
C9orf3-214ENST00000473778 DDX60Q8IY21 1712 aaKnown RBP12.84□□□□□ -0.35
C9orf3-214ENST00000473778 GOLGA6L6A8MZA4 724 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 RAB11FIP4Q86YS3 637 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 DENND2AQ9ULE3 1009 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 KIF3AQ9Y496 699 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 MYO5AQ9Y4I1 1855 aaKnown RBP12.84□□□□□ -0.35
C9orf3-214ENST00000473778 CPDO75976 1380 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 TPM3P06753 285 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 DRC7Q8IY82 874 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 SYNE4Q8N205 404 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 CCDC191Q8NCU4 936 aa12.84□□□□□ -0.35
C9orf3-214ENST00000473778 SPEF2Q9C093 1822 aa12.83□□□□□ -0.35
C9orf3-214ENST00000473778 NEDD4P46934 1319 aa12.83□□□□□ -0.36
C9orf3-214ENST00000473778 UTP14CQ5TAP6 766 aaKnown RBP12.83□□□□□ -0.36
C9orf3-214ENST00000473778 DHX40Q8IX18 779 aaKnown RBP12.83□□□□□ -0.36
C9orf3-214ENST00000473778 BBXQ8WY36 941 aaPredicted RBP12.83□□□□□ -0.36
C9orf3-214ENST00000473778 C16orf45Q96MC5 204 aaPredicted RBP12.83□□□□□ -0.36
C9orf3-214ENST00000473778 BCL11BQ9C0K0 894 aaPredicted RBP12.83□□□□□ -0.36
C9orf3-214ENST00000473778 PUS7LQ9H0K6 701 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms