RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 ESRRGP62508 458 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 ARHGAP18Q8N392 663 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 TCP11Q8WWU5 503 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 DRC3Q9H069 523 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 BCAP29Q9UHQ4 241 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 RPGRIP1LQ68CZ1 1315 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 FGFR1OPO95684 399 aaKnown RBP10.14□□□□□ -0.79
COL6A3-210ENST00000473258 CCDC159P0C7I6 412 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 GFM2Q969S9 779 aaKnown RBP10.14□□□□□ -0.79
COL6A3-210ENST00000473258 S100BP04271 92 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-210ENST00000473258 TSNARE1Q96NA8 513 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 CFDP1Q9UEE9 299 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-210ENST00000473258 N4BP3O15049 544 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 POTEJP0CG39 1038 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 RAB3GAP1Q15042 981 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 DACT3Q96B18 629 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-210ENST00000473258 RUNDC1Q96C34 613 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 MPHOSPH6Q99547 160 aaKnown RBP10.14□□□□□ -0.79
COL6A3-210ENST00000473258 CEP131Q9UPN4 1083 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 ARHGEF9O43307 516 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 MYO1BO43795 1136 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 RNF40O75150 1001 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 NBPF7P0C2Y1 421 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-210ENST00000473258 NMIQ13287 307 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-210ENST00000473258 TRIM58Q8NG06 486 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 RPGRIP1Q96KN7 1286 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 PLVAPQ9BX97 442 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 DNAJC25Q9H1X3 360 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 TYRO3Q06418 890 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 CCDC122Q5T0U0 273 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 GOLGA8KD6RF30 607 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 NEK2P51955 445 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 ZNF445P59923 1031 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 NOP14P78316 857 aaKnown RBP10.13□□□□□ -0.79
COL6A3-210ENST00000473258 IFT88Q13099 833 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 WASHC4Q2M389 1173 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 CTAGE1Q96RT6 745 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 KRT32Q14532 448 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 ST13P4Q8IZP2 240 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-210ENST00000473258 UTP14AQ9BVJ6 771 aaKnown RBP10.13□□□□□ -0.79
COL6A3-210ENST00000473258 TSGA10Q9BZW7 698 aa10.13□□□□□ -0.79
COL6A3-210ENST00000473258 ZNF330Q9Y3S2 320 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-210ENST00000473258 RASSF10A6NK89 507 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 MPHOSPH9Q99550 1183 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 ATP2A1O14983 1001 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 MSANTD4Q8NCY6 345 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 EPSTI1Q96J88 318 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 SH3GL2Q99962 352 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 ZHX3Q9H4I2 956 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 BAG2O95816 211 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 SYF2O95926 243 aaKnown RBP10.12□□□□□ -0.79
COL6A3-210ENST00000473258 TAOK1Q7L7X3 1001 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 NME8Q8N427 588 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 KLHL14Q9P2G3 628 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 EID1Q9Y6B2 187 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 EVC2Q86UK5 1308 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 FLOT1O75955 427 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 APOEP02649 317 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 AOPEPQ8N6M6 819 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 NAPGQ99747 312 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-210ENST00000473258 GUCA1BQ9UMX6 200 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 ST20-MTHFSA0A0A6YYL1 179 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 EEF2P13639 858 aaKnown RBP10.12□□□□□ -0.79
COL6A3-210ENST00000473258 CTNNA2P26232 953 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 FKBP5Q13451 457 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-210ENST00000473258 SKAP1Q86WV1 359 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 ENAHQ8N8S7 591 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-210ENST00000473258 SYNCQ9H7C4 482 aa10.12□□□□□ -0.79
COL6A3-210ENST00000473258 TFIP11Q9UBB9 837 aaKnown RBP10.12□□□□□ -0.79
COL6A3-210ENST00000473258 KDM1AO60341 852 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 PKD2Q13563 968 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 ANKRD20A3Q5VUR7 823 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 MYSM1Q5VVJ2 828 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 SND1Q7KZF4 910 aaKnown RBP eCLIP10.11□□□□□ -0.79
COL6A3-210ENST00000473258 USP48Q86UV5 1035 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 BCAR3O75815 825 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 IFT20Q8IY31 132 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 FAM204AQ9H8W3 233 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 EFCAB8A8MWE9 144 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 MCF2LO15068 1137 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 TPP2P29144 1249 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-210ENST00000473258 MTIF2P46199 727 aaKnown RBP10.11□□□□□ -0.79
COL6A3-210ENST00000473258 ARL10Q8N8L6 244 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 MIS12Q9H081 205 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 CAND2O75155 1236 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 GCFC2P16383 781 aaKnown RBP10.11□□□□□ -0.79
COL6A3-210ENST00000473258 LMNB2Q03252 620 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 C8orf74Q6P047 294 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 TSG101Q99816 390 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 SRCIN1Q9C0H9 1055 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 CTTNBP2NLQ9P2B4 639 aa10.11□□□□□ -0.79
COL6A3-210ENST00000473258 GNAI3P08754 354 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 SPAG1Q07617 926 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 TRIM60Q495X7 471 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 HIBCHQ6NVY1 386 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-210ENST00000473258 FGD4Q96M96 766 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 PDE11AQ9HCR9 933 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 PRPHP41219 470 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 SPATA17Q96L03 361 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 BIN2Q9UBW5 565 aaPredicted RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms