RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 PDE6BP35913 854 aa15.52■□□□□ 0.08
VPS13D-205ENST00000473099 DNAJC2Q99543 621 aaKnown RBP15.52■□□□□ 0.08
VPS13D-205ENST00000473099 SGSM2O43147 1006 aa15.51■□□□□ 0.07
VPS13D-205ENST00000473099 BBOX1O75936 387 aa15.51■□□□□ 0.07
VPS13D-205ENST00000473099 TTF1Q15361 905 aaPredicted RBP15.51■□□□□ 0.07
VPS13D-205ENST00000473099 CCDC24Q8N4L8 307 aa15.51■□□□□ 0.07
VPS13D-205ENST00000473099 HELBQ8NG08 1087 aaPredicted RBP15.51■□□□□ 0.07
VPS13D-205ENST00000473099 USP26Q9BXU7 913 aa15.51■□□□□ 0.07
VPS13D-205ENST00000473099 ZBTB22O15209 634 aa15.5■□□□□ 0.07
VPS13D-205ENST00000473099 CCDC102BQ68D86 513 aa15.5■□□□□ 0.07
VPS13D-205ENST00000473099 KIAA1211Q6ZU35 1233 aa15.5■□□□□ 0.07
VPS13D-205ENST00000473099 IL27Q8NEV9 243 aa15.5■□□□□ 0.07
VPS13D-205ENST00000473099 GNL3LQ9NVN8 582 aaKnown RBP15.5■□□□□ 0.07
VPS13D-205ENST00000473099 LTBP1Q14766 1721 aa15.5■□□□□ 0.07
VPS13D-205ENST00000473099 KIAA1551Q9HCM1 1747 aa15.49■□□□□ 0.07
VPS13D-205ENST00000473099 GOLIM4O00461 696 aa15.49■□□□□ 0.07
VPS13D-205ENST00000473099 TAF5LO75529 589 aa15.49■□□□□ 0.07
VPS13D-205ENST00000473099 ZFYP08048 801 aaPredicted RBP15.49■□□□□ 0.07
VPS13D-205ENST00000473099 NPR1P16066 1061 aa15.49■□□□□ 0.07
VPS13D-205ENST00000473099 KCNJ4P48050 445 aa15.49■□□□□ 0.07
VPS13D-205ENST00000473099 IPO9Q96P70 1041 aaKnown RBP15.49■□□□□ 0.07
VPS13D-205ENST00000473099 SNRKQ9NRH2 765 aa15.49■□□□□ 0.07
VPS13D-205ENST00000473099 LEMD3Q9Y2U8 911 aa15.49■□□□□ 0.07
VPS13D-205ENST00000473099 XDHP47989 1333 aa15.48■□□□□ 0.07
VPS13D-205ENST00000473099 ALDH1B1P30837 517 aa15.48■□□□□ 0.07
VPS13D-205ENST00000473099 CAVIN4Q5BKX8 364 aa15.48■□□□□ 0.07
VPS13D-205ENST00000473099 ZSCAN25Q6NSZ9 544 aa15.48■□□□□ 0.07
VPS13D-205ENST00000473099 CWC27Q6UX04 472 aaKnown RBP15.48■□□□□ 0.07
VPS13D-205ENST00000473099 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.48■□□□□ 0.07
VPS13D-205ENST00000473099 ANO2Q9NQ90 1003 aa15.48■□□□□ 0.07
VPS13D-205ENST00000473099 MAST2Q6P0Q8 1798 aa15.48■□□□□ 0.07
VPS13D-205ENST00000473099 DUOX1Q9NRD9 1551 aa15.48■□□□□ 0.07
VPS13D-205ENST00000473099 ZNF804BA4D1E1 1349 aa15.47■□□□□ 0.07
VPS13D-205ENST00000473099 SEMA3EO15041 775 aa15.47■□□□□ 0.07
VPS13D-205ENST00000473099 MCAMP43121 646 aa15.47■□□□□ 0.07
VPS13D-205ENST00000473099 PHKA1P46020 1223 aa15.47■□□□□ 0.07
VPS13D-205ENST00000473099 FKBP4Q02790 459 aaKnown RBP eCLIP15.47■□□□□ 0.07
VPS13D-205ENST00000473099 BECN1Q14457 450 aa15.47■□□□□ 0.07
VPS13D-205ENST00000473099 PPP1R1BQ9UD71 204 aaPredicted RBP15.47■□□□□ 0.07
VPS13D-205ENST00000473099 SRGNP10124 158 aa15.46■□□□□ 0.07
VPS13D-205ENST00000473099 ANAPC15P60006 121 aa15.46■□□□□ 0.07
VPS13D-205ENST00000473099 NMIQ13287 307 aaPredicted RBP15.46■□□□□ 0.07
VPS13D-205ENST00000473099 MSL1Q68DK7 614 aa15.46■□□□□ 0.07
VPS13D-205ENST00000473099 MASTLQ96GX5 879 aa15.46■□□□□ 0.07
VPS13D-205ENST00000473099 SPON1Q9HCB6 807 aa15.46■□□□□ 0.07
VPS13D-205ENST00000473099 HELLSQ9NRZ9 838 aa15.46■□□□□ 0.07
VPS13D-205ENST00000473099 CHD4Q14839 1912 aa15.46■□□□□ 0.07
VPS13D-205ENST00000473099 MED23Q9ULK4 1368 aa15.46■□□□□ 0.07
VPS13D-205ENST00000473099 PDS5AQ29RF7 1337 aaKnown RBP15.45■□□□□ 0.06
VPS13D-205ENST00000473099 RNF113AO15541 343 aaKnown RBP15.45■□□□□ 0.06
VPS13D-205ENST00000473099 IGSF3O75054 1194 aa15.45■□□□□ 0.06
VPS13D-205ENST00000473099 ZAP70P43403 619 aa15.45■□□□□ 0.06
VPS13D-205ENST00000473099 C15orf52Q6ZUT6 534 aaKnown RBP15.45■□□□□ 0.06
VPS13D-205ENST00000473099 VPS37DQ86XT2 251 aa15.45■□□□□ 0.06
VPS13D-205ENST00000473099 SPATA5Q8NB90 893 aa15.45■□□□□ 0.06
VPS13D-205ENST00000473099 EDC3Q96F86 508 aaKnown RBP15.45■□□□□ 0.06
VPS13D-205ENST00000473099 TMX4Q9H1E5 349 aaPredicted RBP15.45■□□□□ 0.06
VPS13D-205ENST00000473099 ANKIB1Q9P2G1 1089 aa15.45■□□□□ 0.06
VPS13D-205ENST00000473099 DAXXQ9UER7 740 aaPredicted RBP15.45■□□□□ 0.06
VPS13D-205ENST00000473099 ATP2B4P23634 1241 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 SCARF1Q14162 830 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 MCMDC2Q4G0Z9 681 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 ZMYM1Q5SVZ6 1142 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 STYK1Q6J9G0 422 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 SP8Q8IXZ3 490 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 PODXL2Q9NZ53 605 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 DENND2AQ9ULE3 1009 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 SLX4Q8IY92 1834 aa15.44■□□□□ 0.06
VPS13D-205ENST00000473099 CCDC171Q6TFL3 1326 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 LAMA4Q16363 1823 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 A0A0D9SFI3 127 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 H0YIN7 160 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 PPEF1O14829 653 aaPredicted RBP15.43■□□□□ 0.06
VPS13D-205ENST00000473099 BCAMP50895 628 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 RASGRF1Q13972 1273 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 RABEP1Q15276 862 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 TMED8Q6PL24 325 aaPredicted RBP15.43■□□□□ 0.06
VPS13D-205ENST00000473099 FBXO33Q7Z6M2 555 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 IL17RAQ96F46 866 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 FAM227BQ96M60 508 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 LSG1Q9H089 658 aaKnown RBP15.43■□□□□ 0.06
VPS13D-205ENST00000473099 HMG20BQ9P0W2 317 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 NDUFB9Q9Y6M9 179 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 C10orf71Q711Q0 1435 aa15.43■□□□□ 0.06
VPS13D-205ENST00000473099 CYP2E1P05181 493 aaPredicted RBP15.42■□□□□ 0.06
VPS13D-205ENST00000473099 HIBADHP31937 336 aaKnown RBP15.42■□□□□ 0.06
VPS13D-205ENST00000473099 MAP3K12Q12852 859 aa15.42■□□□□ 0.06
VPS13D-205ENST00000473099 FAM84BQ96KN1 310 aaPredicted RBP15.42■□□□□ 0.06
VPS13D-205ENST00000473099 GGA1Q9UJY5 639 aa15.42■□□□□ 0.06
VPS13D-205ENST00000473099 ATP6V0A2Q9Y487 856 aa15.42■□□□□ 0.06
VPS13D-205ENST00000473099 SNAP23O00161 211 aa15.41■□□□□ 0.06
VPS13D-205ENST00000473099 HSPA4P34932 840 aa15.41■□□□□ 0.06
VPS13D-205ENST00000473099 WASHC4Q2M389 1173 aa15.41■□□□□ 0.06
VPS13D-205ENST00000473099 ZNF804AQ7Z570 1209 aa15.41■□□□□ 0.06
VPS13D-205ENST00000473099 C2CD5Q86YS7 1000 aa15.41■□□□□ 0.06
VPS13D-205ENST00000473099 APPBP2Q92624 585 aa15.41■□□□□ 0.06
VPS13D-205ENST00000473099 CNKSR1Q969H4 720 aa15.41■□□□□ 0.06
VPS13D-205ENST00000473099 ANTXR1Q9H6X2 564 aa15.41■□□□□ 0.06
VPS13D-205ENST00000473099 BRCA1P38398 1863 aaKnown RBP15.41■□□□□ 0.06
VPS13D-205ENST00000473099 MYH2Q9UKX2 1941 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms