RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 TBC1D10BQ4KMP7 808 aaPredicted RBP15.06■□□□□ 0
SYNE1-221ENST00000472563 DACT2Q5SW24 774 aa15.06■□□□□ 0
SYNE1-221ENST00000472563 STRIP1Q5VSL9 837 aa15.06■□□□□ 0
SYNE1-221ENST00000472563 ANKRD44Q8N8A2 993 aa15.06■□□□□ 0
SYNE1-221ENST00000472563 HELBQ8NG08 1087 aaPredicted RBP15.06■□□□□ 0
SYNE1-221ENST00000472563 GLIS2Q9BZE0 524 aaPredicted RBP15.06■□□□□ 0
SYNE1-221ENST00000472563 BICC1Q9H694 974 aaKnown RBP15.06■□□□□ 0
SYNE1-221ENST00000472563 CNNM1Q9NRU3 951 aa15.06■□□□□ 0
SYNE1-221ENST00000472563 CNTNAP1P78357 1384 aa15.06■□□□□ 0
SYNE1-221ENST00000472563 CACNA1FO60840 1977 aa15.05■□□□□ 0
SYNE1-221ENST00000472563 USP17L8P0C7I0 530 aa15.05■□□□□ -0
SYNE1-221ENST00000472563 FMR1Q06787 632 aaKnown RBP eCLIP15.05■□□□□ -0
SYNE1-221ENST00000472563 CST9Q5W186 159 aa15.05■□□□□ -0
SYNE1-221ENST00000472563 IRS2Q9Y4H2 1338 aa15.05■□□□□ -0
SYNE1-221ENST00000472563 RASSF10A6NK89 507 aa15.04■□□□□ -0
SYNE1-221ENST00000472563 SNAP23O00161 211 aa15.04■□□□□ -0
SYNE1-221ENST00000472563 HNRNPUQ00839 825 aaKnown RBP eCLIP15.04■□□□□ -0
SYNE1-221ENST00000472563 KIF4BQ2VIQ3 1234 aa15.04■□□□□ -0
SYNE1-221ENST00000472563 DEFB115Q30KQ5 88 aa15.04■□□□□ -0
SYNE1-221ENST00000472563 RBM26Q5T8P6 1007 aaKnown RBP15.04■□□□□ -0
SYNE1-221ENST00000472563 ARHGAP45Q92619 1136 aa15.04■□□□□ -0
SYNE1-221ENST00000472563 CD209Q9NNX6 404 aa15.04■□□□□ -0
SYNE1-221ENST00000472563 MYO3BQ8WXR4 1341 aa15.03■□□□□ -0
SYNE1-221ENST00000472563 KIF16BQ96L93 1317 aa15.03■□□□□ -0
SYNE1-221ENST00000472563 MMP14P50281 582 aa15.03■□□□□ -0
SYNE1-221ENST00000472563 PUS3Q9BZE2 481 aaKnown RBP15.03■□□□□ -0
SYNE1-221ENST00000472563 ABT1Q9ULW3 272 aaKnown RBP15.03■□□□□ -0
SYNE1-221ENST00000472563 RIPOR2Q9Y4F9 1068 aa15.03■□□□□ -0
SYNE1-221ENST00000472563 PLIN1O60240 522 aa15.02■□□□□ -0
SYNE1-221ENST00000472563 CELF2O95319 508 aaKnown RBP15.02■□□□□ -0
SYNE1-221ENST00000472563 VEGFBP49765 207 aa15.02■□□□□ -0
SYNE1-221ENST00000472563 UBE4AQ14139 1066 aa15.02■□□□□ -0
SYNE1-221ENST00000472563 TTLL5Q6EMB2 1281 aa15.02■□□□□ -0
SYNE1-221ENST00000472563 ZNF804AQ7Z570 1209 aa15.02■□□□□ -0
SYNE1-221ENST00000472563 USP48Q86UV5 1035 aa15.02■□□□□ -0
SYNE1-221ENST00000472563 DCPSQ96C86 337 aaKnown RBP15.02■□□□□ -0
SYNE1-221ENST00000472563 MYOZ2Q9NPC6 264 aa15.02■□□□□ -0
SYNE1-221ENST00000472563 MROH5Q6ZUA9 1318 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 IL1R1P14778 569 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 GTF2IP78347 998 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 KRT26Q7Z3Y9 468 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 OGFOD1Q8N543 542 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 FBXW7Q969H0 707 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 MXD3Q9BW11 206 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 HDAC5Q9UQL6 1122 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 TLL2Q9Y6L7 1015 aa15.01□□□□□ -0.01
SYNE1-221ENST00000472563 IPO8O15397 1037 aaKnown RBP15□□□□□ -0.01
SYNE1-221ENST00000472563 UBTFL1P0CB47 393 aaPredicted RBP15□□□□□ -0.01
SYNE1-221ENST00000472563 SCARF1Q14162 830 aa15□□□□□ -0.01
SYNE1-221ENST00000472563 INTS3Q68E01 1043 aaKnown RBP15□□□□□ -0.01
SYNE1-221ENST00000472563 GGA3Q9NZ52 723 aa15□□□□□ -0.01
SYNE1-221ENST00000472563 RFX5P48382 616 aaPredicted RBP14.99□□□□□ -0.01
SYNE1-221ENST00000472563 LRRC24Q50LG9 513 aa14.99□□□□□ -0.01
SYNE1-221ENST00000472563 SAPCD2Q86UD0 394 aa14.99□□□□□ -0.01
SYNE1-221ENST00000472563 SULF1Q8IWU6 871 aa14.99□□□□□ -0.01
SYNE1-221ENST00000472563 HHIPL1Q96JK4 782 aa14.99□□□□□ -0.01
SYNE1-221ENST00000472563 ASTN2O75129 1339 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-221ENST00000472563 WDR33Q9C0J8 1336 aaKnown RBP14.98□□□□□ -0.01
SYNE1-221ENST00000472563 ADM5C9JUS6 153 aa14.98□□□□□ -0.01
SYNE1-221ENST00000472563 BCAR3O75815 825 aa14.98□□□□□ -0.01
SYNE1-221ENST00000472563 SASH1O94885 1247 aa14.98□□□□□ -0.01
SYNE1-221ENST00000472563 HSPA1AP0DMV8 641 aaKnown RBP14.98□□□□□ -0.01
SYNE1-221ENST00000472563 HSPA1BP0DMV9 641 aaKnown RBP14.98□□□□□ -0.01
SYNE1-221ENST00000472563 ECE1P42892 770 aa14.98□□□□□ -0.01
SYNE1-221ENST00000472563 FKBP1AP62942 108 aaKnown RBP14.98□□□□□ -0.01
SYNE1-221ENST00000472563 METTL24Q5JXM2 366 aa14.98□□□□□ -0.01
SYNE1-221ENST00000472563 ANGEL2Q5VTE6 544 aaKnown RBP14.98□□□□□ -0.01
SYNE1-221ENST00000472563 DLK2Q6UY11 383 aa14.98□□□□□ -0.01
SYNE1-221ENST00000472563 KLHDC4Q8TBB5 520 aa14.98□□□□□ -0.01
SYNE1-221ENST00000472563 ZNF408Q9H9D4 720 aa14.98□□□□□ -0.01
SYNE1-221ENST00000472563 PITPNM2Q9BZ72 1349 aa14.97□□□□□ -0.01
SYNE1-221ENST00000472563 EYA2O00167 538 aa14.97□□□□□ -0.01
SYNE1-221ENST00000472563 PDE8BO95263 885 aa14.97□□□□□ -0.01
SYNE1-221ENST00000472563 HIBADHP31937 336 aaKnown RBP14.97□□□□□ -0.01
SYNE1-221ENST00000472563 PTPN12Q05209 780 aaKnown RBP14.97□□□□□ -0.01
SYNE1-221ENST00000472563 KIAA0825Q8IV33 1275 aa14.97□□□□□ -0.01
SYNE1-221ENST00000472563 CERS5Q8N5B7 392 aa14.97□□□□□ -0.01
SYNE1-221ENST00000472563 TDRD7Q8NHU6 1098 aaKnown RBP14.97□□□□□ -0.01
SYNE1-221ENST00000472563 FAM84BQ96KN1 310 aaPredicted RBP14.97□□□□□ -0.01
SYNE1-221ENST00000472563 CAPNS2Q96L46 248 aa14.97□□□□□ -0.01
SYNE1-221ENST00000472563 HDAC9Q9UKV0 1011 aa14.97□□□□□ -0.01
SYNE1-221ENST00000472563 MYH3P11055 1940 aa14.97□□□□□ -0.01
SYNE1-221ENST00000472563 ZBED9Q6R2W3 1325 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 FAM205AQ6ZU69 1335 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 GNAI3P08754 354 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 TRIM27P14373 513 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 GYG1P46976 350 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 NBPF9Q3BBW0 867 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 ATF7IPQ6VMQ6 1270 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 VGLL2Q8N8G2 317 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 MEIS3Q99687 375 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 FBXO3Q9UK99 471 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 LRRFIP2Q9Y608 721 aaKnown RBP14.96□□□□□ -0.01
SYNE1-221ENST00000472563 PCNTO95613 3336 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 SCN9AQ15858 1988 aa14.96□□□□□ -0.01
SYNE1-221ENST00000472563 WNT10BO00744 389 aa14.95□□□□□ -0.02
SYNE1-221ENST00000472563 CYP4F22Q6NT55 531 aa14.95□□□□□ -0.02
SYNE1-221ENST00000472563 FBXO33Q7Z6M2 555 aa14.95□□□□□ -0.02
SYNE1-221ENST00000472563 FRAT1Q92837 279 aaPredicted RBP14.95□□□□□ -0.02
SYNE1-221ENST00000472563 ZBED3Q96IU2 234 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms