RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 KIAA1211Q6ZU35 1233 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 CCDC24Q8N4L8 307 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 GRAPLQ8TC17 118 aaPredicted RBP11.33□□□□□ -0.6
VPS52-216ENST00000471309 SNX21Q969T3 373 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 FAM227BQ96M60 508 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 ANKRD2Q9GZV1 360 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 DAXXQ9UER7 740 aaPredicted RBP11.33□□□□□ -0.6
VPS52-216ENST00000471309 MINPP1Q9UNW1 487 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 NDUFB9Q9Y6M9 179 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 EP400Q96L91 3159 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 CCDC171Q6TFL3 1326 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 KLRG2A4D1S0 409 aaPredicted RBP11.32□□□□□ -0.6
VPS52-216ENST00000471309 MCAMP43121 646 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 PHKA1P46020 1223 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 BAG6P46379 1132 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 EN1Q05925 392 aaPredicted RBP11.32□□□□□ -0.6
VPS52-216ENST00000471309 SF3B2Q13435 895 aaKnown RBP11.32□□□□□ -0.6
VPS52-216ENST00000471309 UBE4AQ14139 1066 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 SLC15A2Q16348 729 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 IL27Q8NEV9 243 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 TBC1D2Q9BYX2 928 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 ANO8Q9HCE9 1232 aaPredicted RBP11.32□□□□□ -0.6
VPS52-216ENST00000471309 STK32BQ9NY57 414 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 SRCAPQ6ZRS2 3230 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 ZNF804BA4D1E1 1349 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 LTBP1Q14766 1721 aa11.32□□□□□ -0.6
VPS52-216ENST00000471309 RNF113AO15541 343 aaKnown RBP11.31□□□□□ -0.6
VPS52-216ENST00000471309 ZFYP08048 801 aaPredicted RBP11.31□□□□□ -0.6
VPS52-216ENST00000471309 HOXA10P31260 410 aaPredicted RBP11.31□□□□□ -0.6
VPS52-216ENST00000471309 FKBP4Q02790 459 aaKnown RBP eCLIP11.31□□□□□ -0.6
VPS52-216ENST00000471309 TTF1Q15361 905 aaPredicted RBP11.31□□□□□ -0.6
VPS52-216ENST00000471309 ZMYM1Q5SVZ6 1142 aa11.31□□□□□ -0.6
VPS52-216ENST00000471309 HSCBQ8IWL3 235 aa11.31□□□□□ -0.6
VPS52-216ENST00000471309 RPGRQ92834 1020 aaKnown RBP11.31□□□□□ -0.6
VPS52-216ENST00000471309 ANTXR1Q9H6X2 564 aa11.31□□□□□ -0.6
VPS52-216ENST00000471309 HELLSQ9NRZ9 838 aa11.31□□□□□ -0.6
VPS52-216ENST00000471309 MAST2Q6P0Q8 1798 aa11.31□□□□□ -0.6
VPS52-216ENST00000471309 MYH13Q9UKX3 1938 aa11.31□□□□□ -0.6
VPS52-216ENST00000471309 DUOX1Q9NRD9 1551 aa11.3□□□□□ -0.6
VPS52-216ENST00000471309 ZAP70P43403 619 aa11.3□□□□□ -0.6
VPS52-216ENST00000471309 MCMDC2Q4G0Z9 681 aa11.3□□□□□ -0.6
VPS52-216ENST00000471309 SPATA5Q8NB90 893 aa11.3□□□□□ -0.6
VPS52-216ENST00000471309 RBM17Q96I25 401 aaKnown RBP11.3□□□□□ -0.6
VPS52-216ENST00000471309 BRIP1Q9BX63 1249 aa11.3□□□□□ -0.6
VPS52-216ENST00000471309 PALD1Q9ULE6 856 aa11.3□□□□□ -0.6
VPS52-216ENST00000471309 RASGRF1Q13972 1273 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 ZSCAN25Q6NSZ9 544 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 PI16Q6UXB8 463 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 TMC4Q7Z404 712 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 ZNF589Q86UQ0 364 aaPredicted RBP11.29□□□□□ -0.6
VPS52-216ENST00000471309 MAP4K1Q92918 833 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 KCNB2Q92953 911 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 CRAMP1Q96RY5 1269 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.29□□□□□ -0.63e-7■■■■□ 22.2
VPS52-216ENST00000471309 HMG20BQ9P0W2 317 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 PARP3Q9Y6F1 533 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 COL1A1P02452 1464 aaPredicted RBP11.29□□□□□ -0.6
VPS52-216ENST00000471309 MAST3O60307 1309 aa11.29□□□□□ -0.6
VPS52-216ENST00000471309 PDS5AQ29RF7 1337 aaKnown RBP11.29□□□□□ -0.6
VPS52-216ENST00000471309 SNAP23O00161 211 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 SEMA3EO15041 775 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 ST18O60284 1047 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 CYP2E1P05181 493 aaPredicted RBP11.28□□□□□ -0.6
VPS52-216ENST00000471309 MMP10P09238 476 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 KCNJ4P48050 445 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 SLC4A3P48751 1232 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 PTH1RQ03431 593 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 CAVIN4Q5BKX8 364 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 ERICH6Q7L0X2 663 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 GNL3LQ9NVN8 582 aaKnown RBP11.28□□□□□ -0.6
VPS52-216ENST00000471309 RBM8AQ9Y5S9 174 aaKnown RBP11.28□□□□□ -0.6
VPS52-216ENST00000471309 XDHP47989 1333 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 IRS2Q9Y4H2 1338 aa11.28□□□□□ -0.6
VPS52-216ENST00000471309 MYO5AQ9Y4I1 1855 aaKnown RBP11.27□□□□□ -0.6
VPS52-216ENST00000471309 KIAA1551Q9HCM1 1747 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 DLEC1Q9Y238 1755 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 K7ELQ4 463 aaPredicted RBP11.27□□□□□ -0.61
VPS52-216ENST00000471309 BBOX1O75936 387 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 CHGBP05060 677 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 ADD2P35612 726 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 PDE6BP35913 854 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 BCAMP50895 628 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 NECTIN1Q15223 517 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 CCDC125Q86Z20 511 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 APPBP2Q92624 585 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 SEC62Q99442 399 aaKnown RBP11.27□□□□□ -0.61
VPS52-216ENST00000471309 PIH1D3Q9NQM4 214 aaKnown RBP11.27□□□□□ -0.61
VPS52-216ENST00000471309 LEMD3Q9Y2U8 911 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 SNX14Q9Y5W7 946 aa11.27□□□□□ -0.61
VPS52-216ENST00000471309 CD2BP2O95400 341 aaKnown RBP11.26□□□□□ -0.61
VPS52-216ENST00000471309 NPR1P16066 1061 aa11.26□□□□□ -0.61
VPS52-216ENST00000471309 GYG1P46976 350 aa11.26□□□□□ -0.61
VPS52-216ENST00000471309 UBE3CQ15386 1083 aa11.26□□□□□ -0.61
VPS52-216ENST00000471309 RNF20Q5VTR2 975 aa11.26□□□□□ -0.61
VPS52-216ENST00000471309 C15orf52Q6ZUT6 534 aaKnown RBP11.26□□□□□ -0.61
VPS52-216ENST00000471309 FBXO33Q7Z6M2 555 aa11.26□□□□□ -0.61
VPS52-216ENST00000471309 DEFB132Q7Z7B7 95 aa11.26□□□□□ -0.61
VPS52-216ENST00000471309 FAM84BQ96KN1 310 aaPredicted RBP11.26□□□□□ -0.61
VPS52-216ENST00000471309 DSCC1Q9BVC3 393 aa11.26□□□□□ -0.61
VPS52-216ENST00000471309 U3KPZ7 1027 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms