RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 RBM26Q5T8P6 1007 aaKnown RBP19.71■□□□□ 0.75
HDAC6-218ENST00000470942 RSBN1LQ6PCB5 846 aaPredicted RBP19.71■□□□□ 0.75
HDAC6-218ENST00000470942 SAMD7Q7Z3H4 446 aa19.71■□□□□ 0.75
HDAC6-218ENST00000470942 ARHGAP45Q92619 1136 aa19.71■□□□□ 0.75
HDAC6-218ENST00000470942 FRAT1Q92837 279 aaPredicted RBP19.71■□□□□ 0.75
HDAC6-218ENST00000470942 CREBZFQ9NS37 354 aa19.71■□□□□ 0.75
HDAC6-218ENST00000470942 IPO8O15397 1037 aaKnown RBP19.7■□□□□ 0.74
HDAC6-218ENST00000470942 BCAR3O75815 825 aa19.7■□□□□ 0.74
HDAC6-218ENST00000470942 AGBL3Q8NEM8 1001 aa19.7■□□□□ 0.74
HDAC6-218ENST00000470942 PUS3Q9BZE2 481 aaKnown RBP19.7■□□□□ 0.74
HDAC6-218ENST00000470942 ZBED9Q6R2W3 1325 aa19.7■□□□□ 0.74
HDAC6-218ENST00000470942 TMEM88BA6NKF7 163 aa19.69■□□□□ 0.74
HDAC6-218ENST00000470942 UBTFL1P0CB47 393 aaPredicted RBP19.69■□□□□ 0.74
HDAC6-218ENST00000470942 TRPM7Q96QT4 1865 aa19.69■□□□□ 0.74
HDAC6-218ENST00000470942 POLR2AP24928 1970 aaKnown RBP19.68■□□□□ 0.74
HDAC6-218ENST00000470942 ZC3H15Q8WU90 426 aaKnown RBP19.68■□□□□ 0.74
HDAC6-218ENST00000470942 EGFRP00533 1210 aa19.67■□□□□ 0.74
HDAC6-218ENST00000470942 FMR1Q06787 632 aaKnown RBP eCLIP19.67■□□□□ 0.742e-6■■■■□ 22.5
HDAC6-218ENST00000470942 GLIS2Q9BZE0 524 aaPredicted RBP19.67■□□□□ 0.74
HDAC6-218ENST00000470942 CD209Q9NNX6 404 aa19.67■□□□□ 0.74
HDAC6-218ENST00000470942 PGAP2Q9UHJ9 254 aa19.67■□□□□ 0.74
HDAC6-218ENST00000470942 TRAF5O00463 557 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 KIF4BQ2VIQ3 1234 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 LRRC24Q50LG9 513 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 STRIP1Q5VSL9 837 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 TTLL5Q6EMB2 1281 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 C15orf52Q6ZUT6 534 aaKnown RBP19.66■□□□□ 0.74
HDAC6-218ENST00000470942 ZNF804AQ7Z570 1209 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 KLHDC4Q8TBB5 520 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 MXD3Q9BW11 206 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 MKRN1Q9UHC7 482 aaKnown RBP19.66■□□□□ 0.74
HDAC6-218ENST00000470942 HDAC5Q9UQL6 1122 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 RIPOR2Q9Y4F9 1068 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 MROH5Q6ZUA9 1318 aa19.66■□□□□ 0.74
HDAC6-218ENST00000470942 USP17L8P0C7I0 530 aa19.65■□□□□ 0.74
HDAC6-218ENST00000470942 GTF2IP78347 998 aa19.65■□□□□ 0.74
HDAC6-218ENST00000470942 UBE4AQ14139 1066 aa19.65■□□□□ 0.74
HDAC6-218ENST00000470942 DACT2Q5SW24 774 aa19.65■□□□□ 0.74
HDAC6-218ENST00000470942 INTS3Q68E01 1043 aaKnown RBP19.65■□□□□ 0.74
HDAC6-218ENST00000470942 ATF7IPQ6VMQ6 1270 aa19.65■□□□□ 0.74
HDAC6-218ENST00000470942 GMLQ99445 158 aa19.65■□□□□ 0.74
HDAC6-218ENST00000470942 IRS2Q9Y4H2 1338 aa19.65■□□□□ 0.74
HDAC6-218ENST00000470942 ZNF646O15015 1829 aaPredicted RBP19.65■□□□□ 0.74
HDAC6-218ENST00000470942 TRIM27P14373 513 aa19.64■□□□□ 0.73
HDAC6-218ENST00000470942 ZNF280AP59817 542 aaPredicted RBP19.64■□□□□ 0.73
HDAC6-218ENST00000470942 METTL24Q5JXM2 366 aa19.64■□□□□ 0.73
HDAC6-218ENST00000470942 CDC37L1Q7L3B6 337 aa19.64■□□□□ 0.73
HDAC6-218ENST00000470942 CLUAP1Q96AJ1 413 aa19.64■□□□□ 0.73
HDAC6-218ENST00000470942 MEIS3Q99687 375 aa19.64■□□□□ 0.73
HDAC6-218ENST00000470942 ABT1Q9ULW3 272 aaKnown RBP19.64■□□□□ 0.73
HDAC6-218ENST00000470942 TNNQ9UQP3 1299 aa19.64■□□□□ 0.73
HDAC6-218ENST00000470942 LRRFIP2Q9Y608 721 aaKnown RBP19.64■□□□□ 0.73
HDAC6-218ENST00000470942 ZNF609O15014 1411 aa19.64■□□□□ 0.73
HDAC6-218ENST00000470942 MYO3BQ8WXR4 1341 aa19.63■□□□□ 0.73
HDAC6-218ENST00000470942 ZKSCAN2Q63HK3 967 aa19.63■□□□□ 0.73
HDAC6-218ENST00000470942 USP48Q86UV5 1035 aa19.63■□□□□ 0.73
HDAC6-218ENST00000470942 DCPSQ96C86 337 aaKnown RBP19.63■□□□□ 0.73
HDAC6-218ENST00000470942 MYOZ2Q9NPC6 264 aa19.63■□□□□ 0.73
HDAC6-218ENST00000470942 OGFOD1Q8N543 542 aa19.62■□□□□ 0.73
HDAC6-218ENST00000470942 JMYQ8N9B5 988 aa19.62■□□□□ 0.73
HDAC6-218ENST00000470942 CELF2O95319 508 aaKnown RBP19.61■□□□□ 0.73
HDAC6-218ENST00000470942 GNAI3P08754 354 aa19.61■□□□□ 0.73
HDAC6-218ENST00000470942 IL1R1P14778 569 aa19.61■□□□□ 0.73
HDAC6-218ENST00000470942 RFX5P48382 616 aaPredicted RBP19.61■□□□□ 0.73
HDAC6-218ENST00000470942 SCARF1Q14162 830 aa19.61■□□□□ 0.73
HDAC6-218ENST00000470942 KRT26Q7Z3Y9 468 aa19.61■□□□□ 0.73
HDAC6-218ENST00000470942 ZNF408Q9H9D4 720 aa19.61■□□□□ 0.73
HDAC6-218ENST00000470942 CNTNAP1P78357 1384 aa19.6■□□□□ 0.73
HDAC6-218ENST00000470942 EYA2O00167 538 aa19.6■□□□□ 0.73
HDAC6-218ENST00000470942 PDE8BO95263 885 aa19.6■□□□□ 0.73
HDAC6-218ENST00000470942 HIBADHP31937 336 aaKnown RBP19.6■□□□□ 0.73
HDAC6-218ENST00000470942 GYG1P46976 350 aa19.6■□□□□ 0.73
HDAC6-218ENST00000470942 PTPN12Q05209 780 aaKnown RBP19.6■□□□□ 0.73
HDAC6-218ENST00000470942 DEFB115Q30KQ5 88 aa19.6■□□□□ 0.73
HDAC6-218ENST00000470942 CST9Q5W186 159 aa19.6■□□□□ 0.73
HDAC6-218ENST00000470942 KIAA0825Q8IV33 1275 aa19.6■□□□□ 0.73
HDAC6-218ENST00000470942 GGA3Q9NZ52 723 aa19.6■□□□□ 0.73
HDAC6-218ENST00000470942 ASTN2O75129 1339 aaPredicted RBP19.59■□□□□ 0.73
HDAC6-218ENST00000470942 SIL1Q9H173 461 aa19.59■□□□□ 0.73
HDAC6-218ENST00000470942 HDAC9Q9UKV0 1011 aa19.59■□□□□ 0.73
HDAC6-218ENST00000470942 JAG2Q9Y219 1238 aa19.59■□□□□ 0.73
HDAC6-218ENST00000470942 ANGEL2Q5VTE6 544 aaKnown RBP19.58■□□□□ 0.72
HDAC6-218ENST00000470942 DLK2Q6UY11 383 aa19.58■□□□□ 0.72
HDAC6-218ENST00000470942 VPS37DQ86XT2 251 aa19.58■□□□□ 0.72
HDAC6-218ENST00000470942 SULF1Q8IWU6 871 aa19.58■□□□□ 0.72
HDAC6-218ENST00000470942 VGLL2Q8N8G2 317 aa19.58■□□□□ 0.72
HDAC6-218ENST00000470942 FAM84BQ96KN1 310 aaPredicted RBP19.58■□□□□ 0.72
HDAC6-218ENST00000470942 RASSF10A6NK89 507 aa19.57■□□□□ 0.72
HDAC6-218ENST00000470942 ADM5C9JUS6 153 aa19.57■□□□□ 0.72
HDAC6-218ENST00000470942 VEGFBP49765 207 aa19.57■□□□□ 0.72
HDAC6-218ENST00000470942 MMP14P50281 582 aa19.57■□□□□ 0.72
HDAC6-218ENST00000470942 PAXIP1Q6ZW49 1069 aaPredicted RBP19.57■□□□□ 0.72
HDAC6-218ENST00000470942 TMEM57Q8N5G2 664 aa19.57■□□□□ 0.72
HDAC6-218ENST00000470942 F8W031 263 aaPredicted RBP19.56■□□□□ 0.72
HDAC6-218ENST00000470942 SASH1O94885 1247 aa19.56■□□□□ 0.72
HDAC6-218ENST00000470942 IFIT1P09914 478 aaKnown RBP19.56■□□□□ 0.72
HDAC6-218ENST00000470942 NBPF9Q3BBW0 867 aa19.56■□□□□ 0.72
HDAC6-218ENST00000470942 CAVIN4Q5BKX8 364 aa19.56■□□□□ 0.72
HDAC6-218ENST00000470942 ATG9AQ7Z3C6 839 aa19.56■□□□□ 0.72
HDAC6-218ENST00000470942 FTSJ3Q8IY81 847 aaKnown RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms