RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 CCDC102BQ68D86 513 aa13.11□□□□□ -0.31
MSX1-202ENST00000468421 TMC4Q7Z404 712 aa13.11□□□□□ -0.31
MSX1-202ENST00000468421 SP8Q8IXZ3 490 aa13.11□□□□□ -0.31
MSX1-202ENST00000468421 RILPL2Q969X0 211 aa13.11□□□□□ -0.31
MSX1-202ENST00000468421 EDC3Q96F86 508 aaKnown RBP13.11□□□□□ -0.31
MSX1-202ENST00000468421 ATP6V0A2Q9Y487 856 aa13.11□□□□□ -0.31
MSX1-202ENST00000468421 ZNF804BA4D1E1 1349 aa13.11□□□□□ -0.31
MSX1-202ENST00000468421 CDC45O75419 566 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 DPEP1P16444 411 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 KCNA3P22001 575 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 ARID4AP29374 1257 aaPredicted RBP13.1□□□□□ -0.31
MSX1-202ENST00000468421 MCAMP43121 646 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 KCNJ4P48050 445 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 CCDC158Q5M9N0 1113 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 PRPF40BQ6NWY9 871 aaKnown RBP13.1□□□□□ -0.31
MSX1-202ENST00000468421 TBC1D9Q6ZT07 1266 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.1□□□□□ -0.31
MSX1-202ENST00000468421 DNAJC2Q99543 621 aaKnown RBP13.1□□□□□ -0.31
MSX1-202ENST00000468421 HAUS7Q99871 368 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 ANKIB1Q9P2G1 1089 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 SNED1Q8TER0 1413 aa13.1□□□□□ -0.31
MSX1-202ENST00000468421 COL1A1P02452 1464 aaPredicted RBP13.1□□□□□ -0.31
MSX1-202ENST00000468421 A0A0G2JLW4 131 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 GYG1P46976 350 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 BCAMP50895 628 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 PI16Q6UXB8 463 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 TXNRD3Q86VQ6 643 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 CNTROBQ8N137 903 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 CNKSR1Q969H4 720 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 GPR101Q96P66 508 aaPredicted RBP13.09□□□□□ -0.31
MSX1-202ENST00000468421 TSHZ2Q9NRE2 1034 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 PODXL2Q9NZ53 605 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 NSFL1CQ9UNZ2 370 aaKnown RBP13.09□□□□□ -0.31
MSX1-202ENST00000468421 LEMD3Q9Y2U8 911 aa13.09□□□□□ -0.31
MSX1-202ENST00000468421 CHD4Q14839 1912 aa13.08□□□□□ -0.32
MSX1-202ENST00000468421 UFL1O94874 794 aa13.08□□□□□ -0.32
MSX1-202ENST00000468421 SEC24BO95487 1268 aa13.08□□□□□ -0.32
MSX1-202ENST00000468421 ATP2B4P23634 1241 aa13.08□□□□□ -0.32
MSX1-202ENST00000468421 EVI5LQ96CN4 794 aa13.08□□□□□ -0.32
MSX1-202ENST00000468421 ZNF512BQ96KM6 892 aaPredicted RBP13.08□□□□□ -0.32
MSX1-202ENST00000468421 FAM84BQ96KN1 310 aaPredicted RBP13.08□□□□□ -0.32
MSX1-202ENST00000468421 SNRKQ9NRH2 765 aa13.08□□□□□ -0.32
MSX1-202ENST00000468421 POLLQ9UGP5 575 aa13.08□□□□□ -0.32
MSX1-202ENST00000468421 GGA1Q9UJY5 639 aa13.08□□□□□ -0.32
MSX1-202ENST00000468421 ZNF646O15015 1829 aaPredicted RBP13.07□□□□□ -0.32
MSX1-202ENST00000468421 GOLIM4O00461 696 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 UQCRFS1P1P0C7P4 283 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 ZAP70P43403 619 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 TGFB2P61812 414 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 RASGRF1Q13972 1273 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 FBXO33Q7Z6M2 555 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 TBC1D16Q8TBP0 767 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 C7orf43Q8WVR3 580 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 ANTXR1Q9H6X2 564 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 PAG1Q9NWQ8 432 aa13.07□□□□□ -0.32
MSX1-202ENST00000468421 ZNF219Q9P2Y4 722 aaPredicted RBP13.07□□□□□ -0.32
MSX1-202ENST00000468421 ARFGEF1Q9Y6D6 1849 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 FER1L6Q2WGJ9 1857 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 CHMLP26374 656 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 FKBP4Q02790 459 aaKnown RBP eCLIP13.06□□□□□ -0.32
MSX1-202ENST00000468421 C15orf52Q6ZUT6 534 aaKnown RBP13.06□□□□□ -0.32
MSX1-202ENST00000468421 KLHL34Q8N239 644 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 MPNDQ8N594 471 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 TTLL6Q8N841 843 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 SPON1Q9HCB6 807 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 HMG20BQ9P0W2 317 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 PPP1R1BQ9UD71 204 aaPredicted RBP13.06□□□□□ -0.32
MSX1-202ENST00000468421 IQSEC3Q9UPP2 1182 aaPredicted RBP13.06□□□□□ -0.32
MSX1-202ENST00000468421 MAST2Q6P0Q8 1798 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 MED23Q9ULK4 1368 aa13.06□□□□□ -0.32
MSX1-202ENST00000468421 CHGBP05060 677 aa13.05□□□□□ -0.32
MSX1-202ENST00000468421 CYP2E1P05181 493 aaPredicted RBP13.05□□□□□ -0.32
MSX1-202ENST00000468421 CAVIN4Q5BKX8 364 aa13.05□□□□□ -0.32
MSX1-202ENST00000468421 KBTBD3Q8NAB2 608 aa13.05□□□□□ -0.32
MSX1-202ENST00000468421 FSD1Q9BTV5 496 aa13.05□□□□□ -0.32
MSX1-202ENST00000468421 IL25Q9H293 177 aa13.05□□□□□ -0.32
MSX1-202ENST00000468421 CD2APQ9Y5K6 639 aa13.05□□□□□ -0.32
MSX1-202ENST00000468421 CCDC88AQ3V6T2 1871 aa13.05□□□□□ -0.32
MSX1-202ENST00000468421 RFX7Q2KHR2 1363 aa13.05□□□□□ -0.32
MSX1-202ENST00000468421 C6orf229H3BNL8 230 aa13.04□□□□□ -0.32
MSX1-202ENST00000468421 C21orf2O43822 256 aa13.04□□□□□ -0.32
MSX1-202ENST00000468421 HIBADHP31937 336 aaKnown RBP13.04□□□□□ -0.32
MSX1-202ENST00000468421 DPP8Q6V1X1 898 aaPredicted RBP13.04□□□□□ -0.32
MSX1-202ENST00000468421 SPATA5Q8NB90 893 aa13.04□□□□□ -0.32
MSX1-202ENST00000468421 PIH1D3Q9NQM4 214 aaKnown RBP13.04□□□□□ -0.32
MSX1-202ENST00000468421 WWC3Q9ULE0 1092 aa13.04□□□□□ -0.32
MSX1-202ENST00000468421 MFAP1P55081 439 aaKnown RBP13.03□□□□□ -0.32
MSX1-202ENST00000468421 VPS37DQ86XT2 251 aa13.03□□□□□ -0.32
MSX1-202ENST00000468421 NLGN2Q8NFZ4 835 aa13.03□□□□□ -0.32
MSX1-202ENST00000468421 ESYT1Q9BSJ8 1104 aa13.03□□□□□ -0.32
MSX1-202ENST00000468421 PSME4Q14997 1843 aa13.03□□□□□ -0.32
MSX1-202ENST00000468421 SCN9AQ15858 1988 aa13.03□□□□□ -0.32
MSX1-202ENST00000468421 A0A0D9SFI3 127 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 RIMBP2O15034 1052 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 NMIQ13287 307 aaPredicted RBP13.02□□□□□ -0.33
MSX1-202ENST00000468421 SLFNL1Q499Z3 407 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 CC2D2BQ6DHV5 1058 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 CASC1Q6TDU7 716 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 CWC27Q6UX04 472 aaKnown RBP13.02□□□□□ -0.33
MSX1-202ENST00000468421 ZNF804AQ7Z570 1209 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms