RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ATXN2LQ8WWM7 1075 aaKnown RBP7.65□□□□□ -1.18
HMGB1-207ENST00000468384 MYLIPQ8WY64 445 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 ZNF622Q969S3 477 aaKnown RBP eCLIP7.65□□□□□ -1.18
HMGB1-207ENST00000468384 SHISA4Q96DD7 197 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 CDH23Q9H251 3354 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 GBA2Q9HCG7 927 aaPredicted RBP7.65□□□□□ -1.18
HMGB1-207ENST00000468384 PGAP2Q9UHJ9 254 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 PLEKHG3A1L390 1219 aa7.64□□□□□ -1.19
HMGB1-207ENST00000468384 TM4SF1P30408 202 aa7.64□□□□□ -1.19
HMGB1-207ENST00000468384 CDC37L1Q7L3B6 337 aa7.64□□□□□ -1.19
HMGB1-207ENST00000468384 NBPF11Q86T75 865 aa7.64□□□□□ -1.19
HMGB1-207ENST00000468384 C2orf69Q8N8R5 385 aa7.64□□□□□ -1.19
HMGB1-207ENST00000468384 ZCRB1Q8TBF4 217 aaKnown RBP7.64□□□□□ -1.19
HMGB1-207ENST00000468384 CFHR5Q9BXR6 569 aa7.64□□□□□ -1.19
HMGB1-207ENST00000468384 C11orf16Q9NQ32 467 aa7.64□□□□□ -1.19
HMGB1-207ENST00000468384 WDFY4Q6ZS81 3184 aa7.64□□□□□ -1.19
HMGB1-207ENST00000468384 FAM208BQ5VWN6 2430 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 USP9XQ93008 2570 aaPredicted RBP7.63□□□□□ -1.19
HMGB1-207ENST00000468384 FAM86C2PA6NEL3 165 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 SMIM22K7EJ46 135 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 FOSL2P15408 326 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 ATP6V1AP38606 617 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 SLC9C1Q4G0N8 1177 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 RASAL3Q86YV0 1011 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 CYP4X1Q8N118 509 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 KCNH5Q8NCM2 988 aa7.63□□□□□ -1.19
HMGB1-207ENST00000468384 NECAB3Q96P71 396 aaPredicted RBP7.63□□□□□ -1.19
HMGB1-207ENST00000468384 ZNF277Q9NRM2 450 aaPredicted RBP7.63□□□□□ -1.19
HMGB1-207ENST00000468384 SRP68Q9UHB9 627 aaKnown RBP7.63□□□□□ -1.19
HMGB1-207ENST00000468384 PTPRZ1P23471 2315 aaPredicted RBP7.63□□□□□ -1.19
HMGB1-207ENST00000468384 SOGA3Q5TF21 947 aa7.62□□□□□ -1.19
HMGB1-207ENST00000468384 DLK2Q6UY11 383 aa7.62□□□□□ -1.19
HMGB1-207ENST00000468384 ADARB2Q9NS39 739 aaKnown RBP7.62□□□□□ -1.19
HMGB1-207ENST00000468384 DNMT3AQ9Y6K1 912 aaPredicted RBP7.62□□□□□ -1.19
HMGB1-207ENST00000468384 PIK3C2GO75747 1445 aa7.61□□□□□ -1.19
HMGB1-207ENST00000468384 TM4SF4P48230 202 aa7.61□□□□□ -1.19
HMGB1-207ENST00000468384 USP48Q86UV5 1035 aa7.61□□□□□ -1.19
HMGB1-207ENST00000468384 KRTAP19-1Q8IUB9 90 aa7.61□□□□□ -1.19
HMGB1-207ENST00000468384 KRTAP17-1Q9BYP8 105 aa7.61□□□□□ -1.19
HMGB1-207ENST00000468384 SEMA6BQ9H3T3 888 aa7.61□□□□□ -1.19
HMGB1-207ENST00000468384 RYDENQ9NUL5 291 aaKnown RBP7.61□□□□□ -1.19
HMGB1-207ENST00000468384 MAP2P11137 1827 aaKnown RBP7.61□□□□□ -1.19
HMGB1-207ENST00000468384 DCHS1Q96JQ0 3298 aa7.61□□□□□ -1.19
HMGB1-207ENST00000468384 RPS6KA4O75676 772 aa7.6□□□□□ -1.19
HMGB1-207ENST00000468384 C6orf132Q5T0Z8 1188 aa7.6□□□□□ -1.19
HMGB1-207ENST00000468384 IL27Q8NEV9 243 aa7.6□□□□□ -1.19
HMGB1-207ENST00000468384 FBXL18Q96ME1 805 aa7.6□□□□□ -1.19
HMGB1-207ENST00000468384 EFCC1Q9HA90 598 aa7.6□□□□□ -1.19
HMGB1-207ENST00000468384 MON2Q7Z3U7 1717 aa7.6□□□□□ -1.19
HMGB1-207ENST00000468384 USP42Q9H9J4 1324 aaKnown RBP7.59□□□□□ -1.19
HMGB1-207ENST00000468384 MRPS5P82675 430 aaKnown RBP7.59□□□□□ -1.19
HMGB1-207ENST00000468384 FKBP4Q02790 459 aaKnown RBP eCLIP7.59□□□□□ -1.197e-6■■■■□ 25.4
HMGB1-207ENST00000468384 TMEM132AQ24JP5 1023 aa7.59□□□□□ -1.19
HMGB1-207ENST00000468384 RC3H1Q5TC82 1133 aaKnown RBP7.59□□□□□ -1.19
HMGB1-207ENST00000468384 TYW1BQ6NUM6 668 aa7.59□□□□□ -1.19
HMGB1-207ENST00000468384 ZC3H15Q8WU90 426 aaKnown RBP7.59□□□□□ -1.19
HMGB1-207ENST00000468384 PIGBQ92521 554 aa7.59□□□□□ -1.19
HMGB1-207ENST00000468384 KIFC2Q96AC6 838 aa7.59□□□□□ -1.19
HMGB1-207ENST00000468384 ERO1AQ96HE7 468 aa7.59□□□□□ -1.19
HMGB1-207ENST00000468384 CNTNAP3BQ96NU0 1288 aa7.59□□□□□ -1.19
HMGB1-207ENST00000468384 PHOX2BQ99453 314 aa7.59□□□□□ -1.19
HMGB1-207ENST00000468384 CNTNAP3Q9BZ76 1288 aa7.59□□□□□ -1.19
HMGB1-207ENST00000468384 UBE2OQ9C0C9 1292 aaKnown RBP7.59□□□□□ -1.19
HMGB1-207ENST00000468384 C14orf93Q9H972 538 aaKnown RBP7.59□□□□□ -1.19
HMGB1-207ENST00000468384 GCN1Q92616 2671 aaKnown RBP7.58□□□□□ -1.2
HMGB1-207ENST00000468384 C3orf80F5H4A9 247 aa7.58□□□□□ -1.2
HMGB1-207ENST00000468384 MAGEA10P43363 369 aaPredicted RBP7.58□□□□□ -1.2
HMGB1-207ENST00000468384 EIF6P56537 245 aaKnown RBP7.58□□□□□ -1.2
HMGB1-207ENST00000468384 CD99L2Q8TCZ2 262 aa7.58□□□□□ -1.2
HMGB1-207ENST00000468384 KCNV2Q8TDN2 545 aa7.58□□□□□ -1.2
HMGB1-207ENST00000468384 ZNF609O15014 1411 aa7.58□□□□□ -1.2
HMGB1-207ENST00000468384 CARMIL3Q8ND23 1372 aa7.58□□□□□ -1.2
HMGB1-207ENST00000468384 IARSP41252 1262 aaKnown RBP7.57□□□□□ -1.2
HMGB1-207ENST00000468384 PRPF40BQ6NWY9 871 aaKnown RBP7.57□□□□□ -1.2
HMGB1-207ENST00000468384 NPAS3Q8IXF0 933 aa7.57□□□□□ -1.2
HMGB1-207ENST00000468384 CDK19Q9BWU1 502 aa7.57□□□□□ -1.2
HMGB1-207ENST00000468384 GPRC5DQ9NZD1 345 aa7.57□□□□□ -1.2
HMGB1-207ENST00000468384 THEGQ9P2T0 379 aa7.57□□□□□ -1.2
HMGB1-207ENST00000468384 RALYQ9UKM9 306 aaKnown RBP7.57□□□□□ -1.2
HMGB1-207ENST00000468384 MRC1P22897 1456 aa7.56□□□□□ -1.2
HMGB1-207ENST00000468384 USP24Q9UPU5 2620 aa7.56□□□□□ -1.2
HMGB1-207ENST00000468384 HIRAP54198 1017 aaPredicted RBP7.56□□□□□ -1.2
HMGB1-207ENST00000468384 CCDC93Q567U6 631 aa7.56□□□□□ -1.2
HMGB1-207ENST00000468384 JDP2Q8WYK2 163 aa7.56□□□□□ -1.2
HMGB1-207ENST00000468384 KCNH6Q9H252 994 aa7.56□□□□□ -1.2
HMGB1-207ENST00000468384 ZMYND8Q9ULU4 1186 aaPredicted RBP7.56□□□□□ -1.2
HMGB1-207ENST00000468384 PTCH2Q9Y6C5 1203 aa7.56□□□□□ -1.2
HMGB1-207ENST00000468384 BCORQ6W2J9 1755 aa7.56□□□□□ -1.2
HMGB1-207ENST00000468384 MAP1BP46821 2468 aaKnown RBP7.55□□□□□ -1.2
HMGB1-207ENST00000468384 FARP2O94887 1054 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-207ENST00000468384 SERPINB2P05120 415 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 IRS1P35568 1242 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 CAP1Q01518 475 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 NFIXQ14938 502 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 CFAP70Q5T0N1 1121 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 LCE1DQ5T752 114 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 SH3TC2Q8TF17 1288 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 C7orf43Q8WVR3 580 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 FBXW7Q969H0 707 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 CNKSR1Q969H4 720 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms