RNA–Protein interactions for RNA: ENST00000463440.1

COL1A1-202, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 614 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-202ENST00000463440 ZNF609O15014 1411 aa20.37■□□□□ 0.85
COL1A1-202ENST00000463440 TMEM88BA6NKF7 163 aa20.37■□□□□ 0.85
COL1A1-202ENST00000463440 PLIN1O60240 522 aa20.37■□□□□ 0.85
COL1A1-202ENST00000463440 UBTFL1P0CB47 393 aaPredicted RBP20.37■□□□□ 0.85
COL1A1-202ENST00000463440 HIRAP54198 1017 aaPredicted RBP20.37■□□□□ 0.85
COL1A1-202ENST00000463440 PGAP2Q9UHJ9 254 aa20.37■□□□□ 0.85
COL1A1-202ENST00000463440 PSME4Q14997 1843 aa20.37■□□□□ 0.85
COL1A1-202ENST00000463440 KLRK1P26718 216 aa20.36■□□□□ 0.85
COL1A1-202ENST00000463440 TBC1D10BQ4KMP7 808 aaPredicted RBP20.36■□□□□ 0.85
COL1A1-202ENST00000463440 C15orf52Q6ZUT6 534 aaKnown RBP20.36■□□□□ 0.85
COL1A1-202ENST00000463440 SAMD7Q7Z3H4 446 aa20.36■□□□□ 0.85
COL1A1-202ENST00000463440 FBXW7Q969H0 707 aa20.36■□□□□ 0.85
COL1A1-202ENST00000463440 SNAP23O00161 211 aa20.35■□□□□ 0.85
COL1A1-202ENST00000463440 BCAR3O75815 825 aa20.35■□□□□ 0.85
COL1A1-202ENST00000463440 STRIP1Q5VSL9 837 aa20.35■□□□□ 0.85
COL1A1-202ENST00000463440 FRAT1Q92837 279 aaPredicted RBP20.35■□□□□ 0.85
COL1A1-202ENST00000463440 PUS3Q9BZE2 481 aaKnown RBP20.35■□□□□ 0.85
COL1A1-202ENST00000463440 A0A1B0GUL6 1792 aa20.35■□□□□ 0.85
COL1A1-202ENST00000463440 MROH5Q6ZUA9 1318 aa20.34■□□□□ 0.85
COL1A1-202ENST00000463440 KIF4BQ2VIQ3 1234 aa20.34■□□□□ 0.85
COL1A1-202ENST00000463440 RBM26Q5T8P6 1007 aaKnown RBP20.34■□□□□ 0.85
COL1A1-202ENST00000463440 INTS3Q68E01 1043 aaKnown RBP20.34■□□□□ 0.85
COL1A1-202ENST00000463440 ZNF804AQ7Z570 1209 aa20.34■□□□□ 0.85
COL1A1-202ENST00000463440 GMLQ99445 158 aa20.34■□□□□ 0.85
COL1A1-202ENST00000463440 CD209Q9NNX6 404 aa20.34■□□□□ 0.85
COL1A1-202ENST00000463440 MYO3BQ8WXR4 1341 aa20.33■□□□□ 0.85
COL1A1-202ENST00000463440 USP17L8P0C7I0 530 aa20.33■□□□□ 0.85
COL1A1-202ENST00000463440 UBE4AQ14139 1066 aa20.33■□□□□ 0.85
COL1A1-202ENST00000463440 DACT2Q5SW24 774 aa20.33■□□□□ 0.85
COL1A1-202ENST00000463440 TTLL5Q6EMB2 1281 aa20.33■□□□□ 0.85
COL1A1-202ENST00000463440 ATF7IPQ6VMQ6 1270 aa20.33■□□□□ 0.85
COL1A1-202ENST00000463440 RIPOR2Q9Y4F9 1068 aa20.33■□□□□ 0.85
COL1A1-202ENST00000463440 IRS2Q9Y4H2 1338 aa20.32■□□□□ 0.84
COL1A1-202ENST00000463440 EGFRP00533 1210 aa20.32■□□□□ 0.84
COL1A1-202ENST00000463440 TRIM27P14373 513 aa20.32■□□□□ 0.84
COL1A1-202ENST00000463440 ZNF280AP59817 542 aaPredicted RBP20.32■□□□□ 0.84
COL1A1-202ENST00000463440 CDC37L1Q7L3B6 337 aa20.32■□□□□ 0.84
COL1A1-202ENST00000463440 JMYQ8N9B5 988 aa20.32■□□□□ 0.84
COL1A1-202ENST00000463440 GLIS2Q9BZE0 524 aaPredicted RBP20.32■□□□□ 0.84
COL1A1-202ENST00000463440 TRAF5O00463 557 aa20.31■□□□□ 0.84
COL1A1-202ENST00000463440 GTF2IP78347 998 aa20.31■□□□□ 0.84
COL1A1-202ENST00000463440 LRRC24Q50LG9 513 aa20.31■□□□□ 0.84
COL1A1-202ENST00000463440 METTL24Q5JXM2 366 aa20.31■□□□□ 0.84
COL1A1-202ENST00000463440 MKRN1Q9UHC7 482 aaKnown RBP20.31■□□□□ 0.84
COL1A1-202ENST00000463440 GNAI3P08754 354 aa20.3■□□□□ 0.84
COL1A1-202ENST00000463440 FMR1Q06787 632 aaKnown RBP eCLIP20.3■□□□□ 0.84
COL1A1-202ENST00000463440 ZKSCAN2Q63HK3 967 aa20.3■□□□□ 0.84
COL1A1-202ENST00000463440 OGFOD1Q8N543 542 aa20.3■□□□□ 0.84
COL1A1-202ENST00000463440 KLHDC4Q8TBB5 520 aa20.3■□□□□ 0.84
COL1A1-202ENST00000463440 DCPSQ96C86 337 aaKnown RBP20.3■□□□□ 0.84
COL1A1-202ENST00000463440 MEIS3Q99687 375 aa20.3■□□□□ 0.84
COL1A1-202ENST00000463440 MYOZ2Q9NPC6 264 aa20.3■□□□□ 0.84
COL1A1-202ENST00000463440 LRRFIP2Q9Y608 721 aaKnown RBP20.3■□□□□ 0.84
COL1A1-202ENST00000463440 IL1R1P14778 569 aa20.29■□□□□ 0.84
COL1A1-202ENST00000463440 MMP14P50281 582 aa20.29■□□□□ 0.84
COL1A1-202ENST00000463440 MXD3Q9BW11 206 aa20.29■□□□□ 0.84
COL1A1-202ENST00000463440 ABT1Q9ULW3 272 aaKnown RBP20.29■□□□□ 0.84
COL1A1-202ENST00000463440 CNTNAP1P78357 1384 aa20.29■□□□□ 0.84
COL1A1-202ENST00000463440 TRPM7Q96QT4 1865 aa20.28■□□□□ 0.84
COL1A1-202ENST00000463440 RFX5P48382 616 aaPredicted RBP20.28■□□□□ 0.84
COL1A1-202ENST00000463440 KRT26Q7Z3Y9 468 aa20.28■□□□□ 0.84
COL1A1-202ENST00000463440 USP48Q86UV5 1035 aa20.28■□□□□ 0.84
COL1A1-202ENST00000463440 CLUAP1Q96AJ1 413 aa20.28■□□□□ 0.84
COL1A1-202ENST00000463440 EYA2O00167 538 aa20.27■□□□□ 0.84
COL1A1-202ENST00000463440 PDE8BO95263 885 aa20.27■□□□□ 0.84
COL1A1-202ENST00000463440 CELF2O95319 508 aaKnown RBP20.27■□□□□ 0.84
COL1A1-202ENST00000463440 PTPN12Q05209 780 aaKnown RBP20.27■□□□□ 0.84
COL1A1-202ENST00000463440 SCARF1Q14162 830 aa20.27■□□□□ 0.84
COL1A1-202ENST00000463440 CST9Q5W186 159 aa20.27■□□□□ 0.84
COL1A1-202ENST00000463440 GGA3Q9NZ52 723 aa20.27■□□□□ 0.84
COL1A1-202ENST00000463440 HDAC9Q9UKV0 1011 aa20.27■□□□□ 0.84
COL1A1-202ENST00000463440 ZNF646O15015 1829 aaPredicted RBP20.26■□□□□ 0.83
COL1A1-202ENST00000463440 HIBADHP31937 336 aaKnown RBP20.26■□□□□ 0.83
COL1A1-202ENST00000463440 DEFB115Q30KQ5 88 aa20.26■□□□□ 0.83
COL1A1-202ENST00000463440 FBXO3Q9UK99 471 aa20.26■□□□□ 0.83
COL1A1-202ENST00000463440 TNNQ9UQP3 1299 aa20.26■□□□□ 0.83
COL1A1-202ENST00000463440 RASSF10A6NK89 507 aa20.25■□□□□ 0.83
COL1A1-202ENST00000463440 GYG1P46976 350 aa20.25■□□□□ 0.83
COL1A1-202ENST00000463440 VPS37DQ86XT2 251 aa20.25■□□□□ 0.83
COL1A1-202ENST00000463440 KIAA0825Q8IV33 1275 aa20.25■□□□□ 0.83
COL1A1-202ENST00000463440 SULF1Q8IWU6 871 aa20.25■□□□□ 0.83
COL1A1-202ENST00000463440 VGLL2Q8N8G2 317 aa20.25■□□□□ 0.83
COL1A1-202ENST00000463440 FAM84BQ96KN1 310 aaPredicted RBP20.25■□□□□ 0.83
COL1A1-202ENST00000463440 ZNF408Q9H9D4 720 aa20.25■□□□□ 0.83
COL1A1-202ENST00000463440 SASH1O94885 1247 aa20.24■□□□□ 0.83
COL1A1-202ENST00000463440 FKBP1AP62942 108 aaKnown RBP20.24■□□□□ 0.83
COL1A1-202ENST00000463440 PUM3Q15397 648 aaKnown RBP20.24■□□□□ 0.83
COL1A1-202ENST00000463440 CAVIN4Q5BKX8 364 aa20.24■□□□□ 0.83
COL1A1-202ENST00000463440 ANGEL2Q5VTE6 544 aaKnown RBP20.24■□□□□ 0.83
COL1A1-202ENST00000463440 TDRD7Q8NHU6 1098 aaKnown RBP20.24■□□□□ 0.83
COL1A1-202ENST00000463440 POLR2AP24928 1970 aaKnown RBP20.24■□□□□ 0.83
COL1A1-202ENST00000463440 ASTN2O75129 1339 aaPredicted RBP20.24■□□□□ 0.83
COL1A1-202ENST00000463440 CIAO1O76071 339 aa20.23■□□□□ 0.83
COL1A1-202ENST00000463440 IFIT1P09914 478 aaKnown RBP20.23■□□□□ 0.83
COL1A1-202ENST00000463440 VEGFBP49765 207 aa20.23■□□□□ 0.83
COL1A1-202ENST00000463440 FTSJ3Q8IY81 847 aaKnown RBP20.23■□□□□ 0.83
COL1A1-202ENST00000463440 TMEM57Q8N5G2 664 aa20.23■□□□□ 0.83
COL1A1-202ENST00000463440 SIL1Q9H173 461 aa20.23■□□□□ 0.83
COL1A1-202ENST00000463440 TLL2Q9Y6L7 1015 aa20.23■□□□□ 0.83
COL1A1-202ENST00000463440 PITPNM2Q9BZ72 1349 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms