RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 FZD9O00144 591 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 TAF5LO75529 589 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 HIBADHP31937 336 aaKnown RBP9.53□□□□□ -0.88
USP4-207ENST00000462673 RFX5P48382 616 aaPredicted RBP9.53□□□□□ -0.88
USP4-207ENST00000462673 RASSF7Q02833 373 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 POLA2Q14181 598 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 AOC3Q16853 763 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 GORABQ5T7V8 394 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 C20orf194Q5TEA3 1177 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 CEP85Q6P2H3 762 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 OLFM4Q6UX06 510 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 GPC2Q8N158 579 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 SIL1Q9H173 461 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 RWDD1Q9H446 243 aaPredicted RBP9.53□□□□□ -0.88
USP4-207ENST00000462673 GPR108Q9NPR9 543 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 MED23Q9ULK4 1368 aa9.52□□□□□ -0.88
USP4-207ENST00000462673 PNMA6EA0A0J9YXQ4 647 aa9.52□□□□□ -0.89
USP4-207ENST00000462673 COL11A2P13942 1736 aaPredicted RBP9.52□□□□□ -0.89
USP4-207ENST00000462673 LMOD1P29536 600 aaPredicted RBP9.52□□□□□ -0.89
USP4-207ENST00000462673 LRRC24Q50LG9 513 aa9.52□□□□□ -0.89
USP4-207ENST00000462673 CCDC158Q5M9N0 1113 aa9.52□□□□□ -0.89
USP4-207ENST00000462673 CIAPIN1Q6FI81 312 aa9.52□□□□□ -0.89
USP4-207ENST00000462673 C16orf71Q8IYS4 520 aaPredicted RBP9.52□□□□□ -0.89
USP4-207ENST00000462673 CLASRPQ8N2M8 674 aaKnown RBP9.52□□□□□ -0.89
USP4-207ENST00000462673 FAM43AQ8N2R8 423 aa9.52□□□□□ -0.89
USP4-207ENST00000462673 HELBQ8NG08 1087 aaPredicted RBP9.52□□□□□ -0.89
USP4-207ENST00000462673 UBE2Q2Q8WVN8 375 aa9.52□□□□□ -0.89
USP4-207ENST00000462673 PUS3Q9BZE2 481 aaKnown RBP9.52□□□□□ -0.89
USP4-207ENST00000462673 C1orf115Q9H7X2 142 aa9.52□□□□□ -0.89
USP4-207ENST00000462673 GPBP1L1Q9HC44 474 aaPredicted RBP9.52□□□□□ -0.89
USP4-207ENST00000462673 SASH1O94885 1247 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 VEGFAP15692 232 aaPredicted RBP9.51□□□□□ -0.89
USP4-207ENST00000462673 RPS12P25398 132 aaKnown RBP9.51□□□□□ -0.89
USP4-207ENST00000462673 ATP2B3Q16720 1220 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 TTLL5Q6EMB2 1281 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 OGFOD1Q8N543 542 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 KLHDC4Q8TBB5 520 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 GCC1Q96CN9 775 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 KIF1BPQ96EK5 621 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 NEUROD6Q96NK8 337 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 BRPF3Q9ULD4 1205 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 MYO3BQ8WXR4 1341 aa9.51□□□□□ -0.89
USP4-207ENST00000462673 USP17L3A6NCW0 530 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 USP17L4A6NCW7 530 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 H7C1D1 291 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 SEMA3EO15041 775 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 ECE2O60344 883 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 IGSF3O75054 1194 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 DOK7Q18PE1 504 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 STRIP1Q5VSL9 837 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 USP17L1Q7RTZ2 530 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 ATG9AQ7Z3C6 839 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 PNMA8AQ86V59 439 aaPredicted RBP9.5□□□□□ -0.89
USP4-207ENST00000462673 ZGPATQ8N5A5 531 aaKnown RBP9.5□□□□□ -0.89
USP4-207ENST00000462673 TBC1D22AQ8WUA7 517 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 DPF2Q92785 391 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 DBNDD1Q9H9R9 158 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 CD209Q9NNX6 404 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 HDAC9Q9UKV0 1011 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 PA2G4Q9UQ80 394 aaKnown RBP9.5□□□□□ -0.89
USP4-207ENST00000462673 GJA3Q9Y6H8 435 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 CHD4Q14839 1912 aa9.5□□□□□ -0.89
USP4-207ENST00000462673 FER1L6Q2WGJ9 1857 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 IFIT2P09913 472 aaKnown RBP9.49□□□□□ -0.89
USP4-207ENST00000462673 UQCRFS1P1P0C7P4 283 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 IL1R1P14778 569 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 KCNA4P22459 653 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 HOXD11P31277 338 aaPredicted RBP9.49□□□□□ -0.89
USP4-207ENST00000462673 FKBP1AP62942 108 aaKnown RBP9.49□□□□□ -0.89
USP4-207ENST00000462673 CXCL9Q07325 125 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 TFCP2Q12800 502 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 AGBL3Q8NEM8 1001 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 LRRCC1Q9C099 1032 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 DCTPP1Q9H773 170 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.49□□□□□ -0.89
USP4-207ENST00000462673 DENND2AQ9ULE3 1009 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 CACNA1SQ13698 1873 aa9.49□□□□□ -0.89
USP4-207ENST00000462673 A0A1B0GUL7 405 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 ZBTB22O15209 634 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 DDNO94850 711 aaPredicted RBP9.48□□□□□ -0.89
USP4-207ENST00000462673 VIL1P09327 827 aaKnown RBP9.48□□□□□ -0.89
USP4-207ENST00000462673 FGFR2P21802 821 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 TIMM10P62072 90 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 HDAC1Q13547 482 aaPredicted RBP9.48□□□□□ -0.89
USP4-207ENST00000462673 C8orf34Q49A92 452 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 FBXO33Q7Z6M2 555 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 VGLL2Q8N8G2 317 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 WDR66Q8TBY9 1149 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 RHPN1Q8TCX5 695 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 CNKSR2Q8WXI2 1034 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 FBXW7Q969H0 707 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 GPATCH3Q96I76 525 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 FAM84BQ96KN1 310 aaPredicted RBP9.48□□□□□ -0.89
USP4-207ENST00000462673 HACL1Q9UJ83 578 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 SUGT1Q9Y2Z0 365 aa9.48□□□□□ -0.89
USP4-207ENST00000462673 GOLGB1Q14789 3259 aaKnown RBP9.47□□□□□ -0.89
USP4-207ENST00000462673 RAD17O75943 681 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 GYG1P46976 350 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 GTF2IP78347 998 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 BECN1Q14457 450 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms