RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 TXNRD3Q86VQ6 643 aa20.28■□□□□ 0.84
COL7A1-203ENST00000459756 KIF16BQ96L93 1317 aa20.27■□□□□ 0.84
COL7A1-203ENST00000459756 TAF5LO75529 589 aa20.27■□□□□ 0.84
COL7A1-203ENST00000459756 KLRK1P26718 216 aa20.27■□□□□ 0.84
COL7A1-203ENST00000459756 TBC1D10BQ4KMP7 808 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-203ENST00000459756 C15orf52Q6ZUT6 534 aaKnown RBP20.27■□□□□ 0.84
COL7A1-203ENST00000459756 HELBQ8NG08 1087 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-203ENST00000459756 GMLQ99445 158 aa20.27■□□□□ 0.84
COL7A1-203ENST00000459756 TRPM7Q96QT4 1865 aa20.26■□□□□ 0.83
COL7A1-203ENST00000459756 CNTNAP1P78357 1384 aa20.26■□□□□ 0.83
COL7A1-203ENST00000459756 TRAF5O00463 557 aa20.26■□□□□ 0.83
COL7A1-203ENST00000459756 ZNF280AP59817 542 aaPredicted RBP20.26■□□□□ 0.83
COL7A1-203ENST00000459756 STRIP1Q5VSL9 837 aa20.26■□□□□ 0.83
COL7A1-203ENST00000459756 CDC37L1Q7L3B6 337 aa20.26■□□□□ 0.83
COL7A1-203ENST00000459756 ANKRD44Q8N8A2 993 aa20.26■□□□□ 0.83
COL7A1-203ENST00000459756 ARHGAP45Q92619 1136 aa20.26■□□□□ 0.83
COL7A1-203ENST00000459756 MKRN1Q9UHC7 482 aaKnown RBP20.26■□□□□ 0.83
COL7A1-203ENST00000459756 EGFRP00533 1210 aa20.25■□□□□ 0.83
COL7A1-203ENST00000459756 USP17L8P0C7I0 530 aa20.25■□□□□ 0.83
COL7A1-203ENST00000459756 KIF4BQ2VIQ3 1234 aa20.25■□□□□ 0.83
COL7A1-203ENST00000459756 DACT2Q5SW24 774 aa20.25■□□□□ 0.83
COL7A1-203ENST00000459756 GLIS2Q9BZE0 524 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-203ENST00000459756 MYO3BQ8WXR4 1341 aa20.25■□□□□ 0.83
COL7A1-203ENST00000459756 IRS2Q9Y4H2 1338 aa20.25■□□□□ 0.83
COL7A1-203ENST00000459756 SNAP23O00161 211 aa20.24■□□□□ 0.83
COL7A1-203ENST00000459756 FMR1Q06787 632 aaKnown RBP eCLIP20.24■□□□□ 0.83
COL7A1-203ENST00000459756 RBM26Q5T8P6 1007 aaKnown RBP20.24■□□□□ 0.83
COL7A1-203ENST00000459756 ZNF646O15015 1829 aaPredicted RBP20.23■□□□□ 0.83
COL7A1-203ENST00000459756 RASSF10A6NK89 507 aa20.23■□□□□ 0.83
COL7A1-203ENST00000459756 PLIN1O60240 522 aa20.23■□□□□ 0.83
COL7A1-203ENST00000459756 FBXW7Q969H0 707 aa20.23■□□□□ 0.83
COL7A1-203ENST00000459756 CD209Q9NNX6 404 aa20.23■□□□□ 0.83
COL7A1-203ENST00000459756 ABT1Q9ULW3 272 aaKnown RBP20.23■□□□□ 0.83
COL7A1-203ENST00000459756 MMP14P50281 582 aa20.22■□□□□ 0.83
COL7A1-203ENST00000459756 CST9Q5W186 159 aa20.22■□□□□ 0.83
COL7A1-203ENST00000459756 TTLL5Q6EMB2 1281 aa20.22■□□□□ 0.83
COL7A1-203ENST00000459756 ZNF804AQ7Z570 1209 aa20.22■□□□□ 0.83
COL7A1-203ENST00000459756 DCPSQ96C86 337 aaKnown RBP20.22■□□□□ 0.83
COL7A1-203ENST00000459756 PUS3Q9BZE2 481 aaKnown RBP20.22■□□□□ 0.83
COL7A1-203ENST00000459756 RIPOR2Q9Y4F9 1068 aa20.22■□□□□ 0.83
COL7A1-203ENST00000459756 MROH5Q6ZUA9 1318 aa20.22■□□□□ 0.83
COL7A1-203ENST00000459756 IPO8O15397 1037 aaKnown RBP20.21■□□□□ 0.83
COL7A1-203ENST00000459756 UBTFL1P0CB47 393 aaPredicted RBP20.21■□□□□ 0.83
COL7A1-203ENST00000459756 UBE4AQ14139 1066 aa20.21■□□□□ 0.83
COL7A1-203ENST00000459756 DEFB115Q30KQ5 88 aa20.21■□□□□ 0.83
COL7A1-203ENST00000459756 OGFOD1Q8N543 542 aa20.21■□□□□ 0.83
COL7A1-203ENST00000459756 MYOZ2Q9NPC6 264 aa20.21■□□□□ 0.83
COL7A1-203ENST00000459756 HDAC5Q9UQL6 1122 aa20.21■□□□□ 0.83
COL7A1-203ENST00000459756 CELF2O95319 508 aaKnown RBP20.2■□□□□ 0.82
COL7A1-203ENST00000459756 GTF2IP78347 998 aa20.2■□□□□ 0.82
COL7A1-203ENST00000459756 KRT26Q7Z3Y9 468 aa20.2■□□□□ 0.82
COL7A1-203ENST00000459756 USP48Q86UV5 1035 aa20.2■□□□□ 0.82
COL7A1-203ENST00000459756 MXD3Q9BW11 206 aa20.2■□□□□ 0.82
COL7A1-203ENST00000459756 IL1R1P14778 569 aa20.19■□□□□ 0.82
COL7A1-203ENST00000459756 VEGFBP49765 207 aa20.19■□□□□ 0.82
COL7A1-203ENST00000459756 INTS3Q68E01 1043 aaKnown RBP20.19■□□□□ 0.82
COL7A1-203ENST00000459756 ZBED9Q6R2W3 1325 aa20.19■□□□□ 0.82
COL7A1-203ENST00000459756 POLR2AP24928 1970 aaKnown RBP20.18■□□□□ 0.82
COL7A1-203ENST00000459756 SCARF1Q14162 830 aa20.18■□□□□ 0.82
COL7A1-203ENST00000459756 METTL24Q5JXM2 366 aa20.18■□□□□ 0.82
COL7A1-203ENST00000459756 SULF1Q8IWU6 871 aa20.18■□□□□ 0.82
COL7A1-203ENST00000459756 GGA3Q9NZ52 723 aa20.18■□□□□ 0.82
COL7A1-203ENST00000459756 TLL2Q9Y6L7 1015 aa20.18■□□□□ 0.82
COL7A1-203ENST00000459756 BCAR3O75815 825 aa20.17■□□□□ 0.82
COL7A1-203ENST00000459756 LRRC24Q50LG9 513 aa20.17■□□□□ 0.82
COL7A1-203ENST00000459756 ZNF408Q9H9D4 720 aa20.17■□□□□ 0.82
COL7A1-203ENST00000459756 TRIM27P14373 513 aa20.16■□□□□ 0.82
COL7A1-203ENST00000459756 RFX5P48382 616 aaPredicted RBP20.16■□□□□ 0.82
COL7A1-203ENST00000459756 ANGEL2Q5VTE6 544 aaKnown RBP20.16■□□□□ 0.82
COL7A1-203ENST00000459756 ATF7IPQ6VMQ6 1270 aa20.16■□□□□ 0.82
COL7A1-203ENST00000459756 KLHDC4Q8TBB5 520 aa20.16■□□□□ 0.82
COL7A1-203ENST00000459756 FRAT1Q92837 279 aaPredicted RBP20.16■□□□□ 0.82
COL7A1-203ENST00000459756 HDAC9Q9UKV0 1011 aa20.16■□□□□ 0.82
COL7A1-203ENST00000459756 ASTN2O75129 1339 aaPredicted RBP20.16■□□□□ 0.82
COL7A1-203ENST00000459756 PITPNM2Q9BZ72 1349 aa20.16■□□□□ 0.82
COL7A1-203ENST00000459756 ADM5C9JUS6 153 aa20.15■□□□□ 0.82
COL7A1-203ENST00000459756 SASH1O94885 1247 aa20.15■□□□□ 0.82
COL7A1-203ENST00000459756 PDE8BO95263 885 aa20.15■□□□□ 0.82
COL7A1-203ENST00000459756 HIBADHP31937 336 aaKnown RBP20.15■□□□□ 0.82
COL7A1-203ENST00000459756 ECE1P42892 770 aa20.15■□□□□ 0.82
COL7A1-203ENST00000459756 FKBP1AP62942 108 aaKnown RBP20.15■□□□□ 0.82
COL7A1-203ENST00000459756 SAPCD2Q86UD0 394 aa20.15■□□□□ 0.82
COL7A1-203ENST00000459756 KIAA0825Q8IV33 1275 aa20.15■□□□□ 0.82
COL7A1-203ENST00000459756 VGLL2Q8N8G2 317 aa20.15■□□□□ 0.82
COL7A1-203ENST00000459756 MEIS3Q99687 375 aa20.15■□□□□ 0.82
COL7A1-203ENST00000459756 LRRFIP2Q9Y608 721 aaKnown RBP20.15■□□□□ 0.82
COL7A1-203ENST00000459756 WDR33Q9C0J8 1336 aaKnown RBP20.14■□□□□ 0.81
COL7A1-203ENST00000459756 EYA2O00167 538 aa20.14■□□□□ 0.81
COL7A1-203ENST00000459756 GNAI3P08754 354 aa20.14■□□□□ 0.81
COL7A1-203ENST00000459756 HSPA1AP0DMV8 641 aaKnown RBP20.14■□□□□ 0.81
COL7A1-203ENST00000459756 HSPA1BP0DMV9 641 aaKnown RBP20.14■□□□□ 0.81
COL7A1-203ENST00000459756 GYG1P46976 350 aa20.14■□□□□ 0.81
COL7A1-203ENST00000459756 PTPN12Q05209 780 aaKnown RBP20.14■□□□□ 0.81
COL7A1-203ENST00000459756 HHIPL1Q96JK4 782 aa20.14■□□□□ 0.81
COL7A1-203ENST00000459756 FAM84BQ96KN1 310 aaPredicted RBP20.14■□□□□ 0.81
COL7A1-203ENST00000459756 NBPF9Q3BBW0 867 aa20.13■□□□□ 0.81
COL7A1-203ENST00000459756 DLK2Q6UY11 383 aa20.13■□□□□ 0.81
COL7A1-203ENST00000459756 PAXIP1Q6ZW49 1069 aaPredicted RBP20.13■□□□□ 0.81
COL7A1-203ENST00000459756 CERS5Q8N5B7 392 aa20.13■□□□□ 0.81
COL7A1-203ENST00000459756 TDRD7Q8NHU6 1098 aaKnown RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 140.8 ms