RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 TNMDQ9H2S6 317 aa12.9□□□□□ -0.34
RFX3-211ENST00000458034 CTNNA3Q9UI47 895 aa12.9□□□□□ -0.34
RFX3-211ENST00000458034 TOGARAM1Q9Y4F4 1720 aa12.9□□□□□ -0.34
RFX3-211ENST00000458034 SOS2Q07890 1332 aaPredicted RBP12.89□□□□□ -0.35
RFX3-211ENST00000458034 CAVIN2O95810 425 aa12.89□□□□□ -0.35
RFX3-211ENST00000458034 TRIM28Q13263 835 aaKnown RBP12.89□□□□□ -0.35
RFX3-211ENST00000458034 TPRNQ4KMQ1 711 aa12.89□□□□□ -0.35
RFX3-211ENST00000458034 TTC39AQ5SRH9 613 aa12.89□□□□□ -0.35
RFX3-211ENST00000458034 NAA16Q6N069 864 aaPredicted RBP12.89□□□□□ -0.35
RFX3-211ENST00000458034 FERMT3Q86UX7 667 aa12.89□□□□□ -0.35
RFX3-211ENST00000458034 SMARCC2Q8TAQ2 1214 aa12.89□□□□□ -0.35
RFX3-211ENST00000458034 FAM200AQ8TCP9 573 aa12.89□□□□□ -0.35
RFX3-211ENST00000458034 LEO1Q8WVC0 666 aaPredicted RBP12.89□□□□□ -0.35
RFX3-211ENST00000458034 BRF1Q92994 677 aa12.89□□□□□ -0.35
RFX3-211ENST00000458034 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.89□□□□□ -0.35
RFX3-211ENST00000458034 A0A1B0GUL7 405 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 A1BGP04217 495 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 TCIRG1Q13488 830 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 HSP90AB3PQ58FF7 597 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 TAF7LQ5H9L4 462 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 GORABQ5T7V8 394 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 SASS6Q6UVJ0 657 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 VSIG10Q8N0Z9 540 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 BICD2Q8TD16 824 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 ZNF396Q96N95 335 aaPredicted RBP12.88□□□□□ -0.35
RFX3-211ENST00000458034 SEC62Q99442 399 aaKnown RBP12.88□□□□□ -0.35
RFX3-211ENST00000458034 PLA2G12BQ9BX93 195 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 CLSTN2Q9H4D0 955 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 ZBTB3Q9H5J0 574 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 TMOD3Q9NYL9 352 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 R3HCC1Q9Y3T6 440 aaKnown RBP12.88□□□□□ -0.35
RFX3-211ENST00000458034 TAF6LQ9Y6J9 622 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 ITGB4P16144 1822 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 NHSL1Q5SYE7 1610 aa12.88□□□□□ -0.35
RFX3-211ENST00000458034 CTAGE5O15320 804 aa12.87□□□□□ -0.35
RFX3-211ENST00000458034 PCCAP05165 728 aaPredicted RBP12.87□□□□□ -0.35
RFX3-211ENST00000458034 EVA1CP58658 441 aa12.87□□□□□ -0.35
RFX3-211ENST00000458034 TYRO3Q06418 890 aa12.87□□□□□ -0.35
RFX3-211ENST00000458034 ZNF274Q96GC6 653 aaPredicted RBP12.87□□□□□ -0.35
RFX3-211ENST00000458034 AGXT2Q9BYV1 514 aa12.87□□□□□ -0.35
RFX3-211ENST00000458034 MAST3O60307 1309 aa12.87□□□□□ -0.35
RFX3-211ENST00000458034 JAK2O60674 1132 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 HSPD1P10809 573 aaKnown RBP12.86□□□□□ -0.35
RFX3-211ENST00000458034 LIG1P18858 919 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 TIMM10P62072 90 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 EXOSC10Q01780 885 aaKnown RBP12.86□□□□□ -0.35
RFX3-211ENST00000458034 SCRN1Q12765 414 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 HSP90AA2PQ14568 343 aaPredicted RBP12.86□□□□□ -0.35
RFX3-211ENST00000458034 LRRC24Q50LG9 513 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 ZSCAN25Q6NSZ9 544 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 RBM43Q6ZSC3 357 aaKnown RBP12.86□□□□□ -0.35
RFX3-211ENST00000458034 FBXL16Q8N461 479 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 NSUN7Q8NE18 718 aaKnown RBP12.86□□□□□ -0.35
RFX3-211ENST00000458034 PIBF1Q8WXW3 757 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 CCDC9Q9Y3X0 531 aaKnown RBP12.86□□□□□ -0.35
RFX3-211ENST00000458034 NDUFB9Q9Y6M9 179 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 LRP6O75581 1613 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 CDHR2Q9BYE9 1310 aa12.86□□□□□ -0.35
RFX3-211ENST00000458034 DDX60Q8IY21 1712 aaKnown RBP12.85□□□□□ -0.35
RFX3-211ENST00000458034 PTPDC1A2A3K4 754 aa12.85□□□□□ -0.35
RFX3-211ENST00000458034 E7EWF7 191 aa12.85□□□□□ -0.35
RFX3-211ENST00000458034 STARD3NLO95772 234 aa12.85□□□□□ -0.35
RFX3-211ENST00000458034 IMMTQ16891 758 aaKnown RBP12.85□□□□□ -0.35
RFX3-211ENST00000458034 GLIPR1L2Q4G1C9 344 aa12.85□□□□□ -0.35
RFX3-211ENST00000458034 STOX1Q6ZVD7 989 aa12.85□□□□□ -0.35
RFX3-211ENST00000458034 MAP7D2Q96T17 732 aa12.85□□□□□ -0.35
RFX3-211ENST00000458034 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.85□□□□□ -0.35
RFX3-211ENST00000458034 DACT1Q9NYF0 836 aa12.85□□□□□ -0.35
RFX3-211ENST00000458034 DHX16O60231 1041 aaKnown RBP12.84□□□□□ -0.35
RFX3-211ENST00000458034 PLCB2Q00722 1185 aa12.84□□□□□ -0.35
RFX3-211ENST00000458034 IFIT5Q13325 482 aaKnown RBP12.84□□□□□ -0.35
RFX3-211ENST00000458034 DNTTIP2Q5QJE6 756 aaKnown RBP12.84□□□□□ -0.35
RFX3-211ENST00000458034 ZBTB38Q8NAP3 1195 aaPredicted RBP12.84□□□□□ -0.35
RFX3-211ENST00000458034 RGS22Q8NE09 1264 aa12.84□□□□□ -0.35
RFX3-211ENST00000458034 APPBP2Q92624 585 aa12.84□□□□□ -0.35
RFX3-211ENST00000458034 DDX11Q96FC9 970 aa12.84□□□□□ -0.35
RFX3-211ENST00000458034 ZNF594Q96JF6 807 aaPredicted RBP12.84□□□□□ -0.35
RFX3-211ENST00000458034 TFIP11Q9UBB9 837 aaKnown RBP12.84□□□□□ -0.35
RFX3-211ENST00000458034 MRVI1Q9Y6F6 885 aa12.84□□□□□ -0.35
RFX3-211ENST00000458034 WDR19Q8NEZ3 1342 aa12.84□□□□□ -0.35
RFX3-211ENST00000458034 PLCH1Q4KWH8 1693 aa12.83□□□□□ -0.35
RFX3-211ENST00000458034 ARAP2Q8WZ64 1704 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 NWD2Q9ULI1 1742 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 UQCRHLA0A096LP55 91 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 DYNC1I1O14576 645 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 UQCRHP07919 91 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 APOBRQ0VD83 1088 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 FAM173BQ6P4H8 233 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 CCDC73Q6ZRK6 1079 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.83□□□□□ -0.36
RFX3-211ENST00000458034 MTERF4Q7Z6M4 381 aaKnown RBP12.83□□□□□ -0.36
RFX3-211ENST00000458034 ZNF579Q8NAF0 562 aaKnown RBP12.83□□□□□ -0.36
RFX3-211ENST00000458034 XAGE2Q96GT9 111 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 PRIMPOLQ96LW4 560 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 STRN4Q9NRL3 753 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 RCOR1Q9UKL0 485 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 COL14A1Q05707 1796 aaKnown RBP12.83□□□□□ -0.36
RFX3-211ENST00000458034 MAP3K15Q6ZN16 1313 aa12.83□□□□□ -0.36
RFX3-211ENST00000458034 M0R2C6 588 aa12.82□□□□□ -0.36
RFX3-211ENST00000458034 CSF1RP07333 972 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms