RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CDC37L1Q7L3B6 337 aa26.75■■□□□ 1.87
HMGB3-205ENST00000455596 GLIS2Q9BZE0 524 aaPredicted RBP26.75■■□□□ 1.87
HMGB3-205ENST00000455596 ABT1Q9ULW3 272 aaKnown RBP26.75■■□□□ 1.87
HMGB3-205ENST00000455596 TAF5LO75529 589 aa26.74■■□□□ 1.87
HMGB3-205ENST00000455596 EGFRP00533 1210 aa26.74■■□□□ 1.87
HMGB3-205ENST00000455596 KIF4BQ2VIQ3 1234 aa26.74■■□□□ 1.87
HMGB3-205ENST00000455596 CNNM1Q9NRU3 951 aa26.74■■□□□ 1.87
HMGB3-205ENST00000455596 KLRK1P26718 216 aa26.73■■□□□ 1.87
HMGB3-205ENST00000455596 HELBQ8NG08 1087 aaPredicted RBP26.73■■□□□ 1.87
HMGB3-205ENST00000455596 BICC1Q9H694 974 aaKnown RBP26.73■■□□□ 1.87
HMGB3-205ENST00000455596 RASSF10A6NK89 507 aa26.72■■□□□ 1.87
HMGB3-205ENST00000455596 BRPF1P55201 1214 aaPredicted RBP26.72■■□□□ 1.87
HMGB3-205ENST00000455596 DEFB115Q30KQ5 88 aa26.72■■□□□ 1.87
HMGB3-205ENST00000455596 FBXW7Q969H0 707 aa26.72■■□□□ 1.87
HMGB3-205ENST00000455596 NOB1Q9ULX3 412 aaKnown RBP26.72■■□□□ 1.87
HMGB3-205ENST00000455596 ZNF280AP59817 542 aaPredicted RBP26.71■■□□□ 1.87
HMGB3-205ENST00000455596 RABL6Q3YEC7 729 aaPredicted RBP26.71■■□□□ 1.87
HMGB3-205ENST00000455596 STRIP1Q5VSL9 837 aa26.71■■□□□ 1.87
HMGB3-205ENST00000455596 CST9Q5W186 159 aa26.71■■□□□ 1.87
HMGB3-205ENST00000455596 GMLQ99445 158 aa26.71■■□□□ 1.87
HMGB3-205ENST00000455596 USP44Q9H0E7 712 aa26.71■■□□□ 1.87
HMGB3-205ENST00000455596 MYO3BQ8WXR4 1341 aa26.7■■□□□ 1.87
HMGB3-205ENST00000455596 USP17L8P0C7I0 530 aa26.7■■□□□ 1.86
HMGB3-205ENST00000455596 VEGFBP49765 207 aa26.7■■□□□ 1.86
HMGB3-205ENST00000455596 C15orf52Q6ZUT6 534 aaKnown RBP26.7■■□□□ 1.86
HMGB3-205ENST00000455596 DCPSQ96C86 337 aaKnown RBP26.7■■□□□ 1.86
HMGB3-205ENST00000455596 SNAP23O00161 211 aa26.69■■□□□ 1.86
HMGB3-205ENST00000455596 PLIN1O60240 522 aa26.69■■□□□ 1.86
HMGB3-205ENST00000455596 CELF2O95319 508 aaKnown RBP26.69■■□□□ 1.86
HMGB3-205ENST00000455596 RARSP54136 660 aaKnown RBP26.69■■□□□ 1.86
HMGB3-205ENST00000455596 DACT2Q5SW24 774 aa26.69■■□□□ 1.86
HMGB3-205ENST00000455596 API5Q9BZZ5 524 aaKnown RBP26.69■■□□□ 1.86
HMGB3-205ENST00000455596 IRS2Q9Y4H2 1338 aa26.68■■□□□ 1.86
HMGB3-205ENST00000455596 TTLL5Q6EMB2 1281 aa26.68■■□□□ 1.86
HMGB3-205ENST00000455596 USP48Q86UV5 1035 aa26.68■■□□□ 1.86
HMGB3-205ENST00000455596 ANKRD44Q8N8A2 993 aa26.68■■□□□ 1.86
HMGB3-205ENST00000455596 CD209Q9NNX6 404 aa26.68■■□□□ 1.86
HMGB3-205ENST00000455596 HSPA1AP0DMV8 641 aaKnown RBP26.67■■□□□ 1.86
HMGB3-205ENST00000455596 HSPA1BP0DMV9 641 aaKnown RBP26.67■■□□□ 1.86
HMGB3-205ENST00000455596 KRT26Q7Z3Y9 468 aa26.67■■□□□ 1.86
HMGB3-205ENST00000455596 ZNF408Q9H9D4 720 aa26.67■■□□□ 1.86
HMGB3-205ENST00000455596 MYOZ2Q9NPC6 264 aa26.67■■□□□ 1.86
HMGB3-205ENST00000455596 TLL2Q9Y6L7 1015 aa26.67■■□□□ 1.86
HMGB3-205ENST00000455596 HNRNPUQ00839 825 aaKnown RBP eCLIP26.66■■□□□ 1.86
HMGB3-205ENST00000455596 ZNF804AQ7Z570 1209 aa26.66■■□□□ 1.86
HMGB3-205ENST00000455596 MXD3Q9BW11 206 aa26.66■■□□□ 1.86
HMGB3-205ENST00000455596 GGA3Q9NZ52 723 aa26.66■■□□□ 1.86
HMGB3-205ENST00000455596 KIF16BQ96L93 1317 aa26.65■■□□□ 1.86
HMGB3-205ENST00000455596 GTF2IP78347 998 aa26.65■■□□□ 1.86
HMGB3-205ENST00000455596 OGFOD1Q8N543 542 aa26.65■■□□□ 1.86
HMGB3-205ENST00000455596 PUS3Q9BZE2 481 aaKnown RBP26.65■■□□□ 1.86
HMGB3-205ENST00000455596 MROH5Q6ZUA9 1318 aa26.65■■□□□ 1.86
HMGB3-205ENST00000455596 SCARF1Q14162 830 aa26.64■■□□□ 1.86
HMGB3-205ENST00000455596 THSD7BQ9C0I4 1608 aa26.64■■□□□ 1.85
HMGB3-205ENST00000455596 WDR33Q9C0J8 1336 aaKnown RBP26.64■■□□□ 1.85
HMGB3-205ENST00000455596 ECM29Q5VYK3 1845 aa26.63■■□□□ 1.85
HMGB3-205ENST00000455596 MMP14P50281 582 aa26.63■■□□□ 1.85
HMGB3-205ENST00000455596 UBE4AQ14139 1066 aa26.63■■□□□ 1.85
HMGB3-205ENST00000455596 PAXIP1Q6ZW49 1069 aaPredicted RBP26.63■■□□□ 1.85
HMGB3-205ENST00000455596 SULF1Q8IWU6 871 aa26.63■■□□□ 1.85
HMGB3-205ENST00000455596 RIPOR2Q9Y4F9 1068 aa26.63■■□□□ 1.85
HMGB3-205ENST00000455596 ASTN2O75129 1339 aaPredicted RBP26.63■■□□□ 1.85
HMGB3-205ENST00000455596 ADM5C9JUS6 153 aa26.62■■□□□ 1.85
HMGB3-205ENST00000455596 IL1R1P14778 569 aa26.62■■□□□ 1.85
HMGB3-205ENST00000455596 ECE1P42892 770 aa26.62■■□□□ 1.85
HMGB3-205ENST00000455596 SAPCD2Q86UD0 394 aa26.62■■□□□ 1.85
HMGB3-205ENST00000455596 ARHGAP45Q92619 1136 aa26.62■■□□□ 1.85
HMGB3-205ENST00000455596 UBTFL1P0CB47 393 aaPredicted RBP26.61■■□□□ 1.85
HMGB3-205ENST00000455596 ANGEL2Q5VTE6 544 aaKnown RBP26.61■■□□□ 1.85
HMGB3-205ENST00000455596 ARAP2Q8WZ64 1704 aa26.6■■□□□ 1.85
HMGB3-205ENST00000455596 LRRC24Q50LG9 513 aa26.6■■□□□ 1.85
HMGB3-205ENST00000455596 DLK2Q6UY11 383 aa26.6■■□□□ 1.85
HMGB3-205ENST00000455596 CAPNS2Q96L46 248 aa26.6■■□□□ 1.85
HMGB3-205ENST00000455596 HDAC9Q9UKV0 1011 aa26.6■■□□□ 1.85
HMGB3-205ENST00000455596 PITPNM2Q9BZ72 1349 aa26.6■■□□□ 1.85
HMGB3-205ENST00000455596 CYP4F22Q6NT55 531 aa26.59■■□□□ 1.85
HMGB3-205ENST00000455596 KIAA0825Q8IV33 1275 aa26.59■■□□□ 1.85
HMGB3-205ENST00000455596 HHIPL1Q96JK4 782 aa26.59■■□□□ 1.85
HMGB3-205ENST00000455596 HDAC5Q9UQL6 1122 aa26.59■■□□□ 1.85
HMGB3-205ENST00000455596 METTL24Q5JXM2 366 aa26.58■■□□□ 1.85
HMGB3-205ENST00000455596 KLHDC4Q8TBB5 520 aa26.58■■□□□ 1.85
HMGB3-205ENST00000455596 MYH13Q9UKX3 1938 aa26.58■■□□□ 1.85
HMGB3-205ENST00000455596 IPO8O15397 1037 aaKnown RBP26.57■■□□□ 1.84
HMGB3-205ENST00000455596 GRM1Q13255 1194 aa26.57■■□□□ 1.84
HMGB3-205ENST00000455596 FKBP1AP62942 108 aaKnown RBP26.56■■□□□ 1.84
HMGB3-205ENST00000455596 NBPF9Q3BBW0 867 aa26.56■■□□□ 1.84
HMGB3-205ENST00000455596 WNT10BO00744 389 aa26.55■■□□□ 1.84
HMGB3-205ENST00000455596 PDE8BO95263 885 aa26.55■■□□□ 1.84
HMGB3-205ENST00000455596 HIBADHP31937 336 aaKnown RBP26.55■■□□□ 1.84
HMGB3-205ENST00000455596 GYG1P46976 350 aa26.55■■□□□ 1.84
HMGB3-205ENST00000455596 RFX5P48382 616 aaPredicted RBP26.55■■□□□ 1.84
HMGB3-205ENST00000455596 INTS3Q68E01 1043 aaKnown RBP26.55■■□□□ 1.84
HMGB3-205ENST00000455596 VGLL2Q8N8G2 317 aa26.55■■□□□ 1.84
HMGB3-205ENST00000455596 C2orf69Q8N8R5 385 aa26.55■■□□□ 1.84
HMGB3-205ENST00000455596 AIDAQ96BJ3 306 aa26.55■■□□□ 1.84
HMGB3-205ENST00000455596 CDCA5Q96FF9 252 aa26.55■■□□□ 1.84
HMGB3-205ENST00000455596 GBA2Q9HCG7 927 aaPredicted RBP26.55■■□□□ 1.84
HMGB3-205ENST00000455596 BCAR3O75815 825 aa26.54■■□□□ 1.84
HMGB3-205ENST00000455596 SASH1O94885 1247 aa26.54■■□□□ 1.84
HMGB3-205ENST00000455596 MAP2K1Q02750 393 aaPredicted RBP26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms