RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 RIC1Q4ADV7 1423 aa12.71□□□□□ -0.38
VIPAS39-203ENST00000448935 MED23Q9ULK4 1368 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 ZPR1O75312 459 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 KCNJ4P48050 445 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 XAGE2Q96GT9 111 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 MPHOSPH8Q99549 860 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 PDE8BO95263 885 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 DDIT3P35638 169 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 FAM196AQ6ZSG2 479 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 MAP4K1Q92918 833 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 KCNB2Q92953 911 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 ZNF512BQ96KM6 892 aaPredicted RBP12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 FAM227BQ96M60 508 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 PALD1Q9ULE6 856 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 SNX14Q9Y5W7 946 aa12.7□□□□□ -0.38
VIPAS39-203ENST00000448935 C4BP0C0L5 1744 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 ARAP2Q8WZ64 1704 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 A0A0D9SFI3 127 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 FAM177BA6PVY3 158 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 GNPATO15228 680 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 ZFYP08048 801 aaPredicted RBP12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 HCLS1P14317 486 aaPredicted RBP12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 IGHMBP2P38935 993 aaKnown RBP12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 MCMDC2Q4G0Z9 681 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 CDC5LQ99459 802 aaKnown RBP12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 TM6SF1Q9BZW5 370 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 HELLSQ9NRZ9 838 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 HMG20BQ9P0W2 317 aa12.69□□□□□ -0.38
VIPAS39-203ENST00000448935 GOLIM4O00461 696 aa12.68□□□□□ -0.38
VIPAS39-203ENST00000448935 UQCRFS1P1P0C7P4 283 aa12.68□□□□□ -0.38
VIPAS39-203ENST00000448935 NECTIN1Q15223 517 aa12.68□□□□□ -0.38
VIPAS39-203ENST00000448935 PUM3Q15397 648 aaKnown RBP12.68□□□□□ -0.38
VIPAS39-203ENST00000448935 IFNL1Q8IU54 200 aa12.68□□□□□ -0.38
VIPAS39-203ENST00000448935 VGLL2Q8N8G2 317 aa12.68□□□□□ -0.38
VIPAS39-203ENST00000448935 LPIN2Q92539 896 aa12.68□□□□□ -0.38
VIPAS39-203ENST00000448935 COL24A1Q17RW2 1714 aa12.68□□□□□ -0.38
VIPAS39-203ENST00000448935 PSMA5P28066 241 aa12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 SSFA2P28290 1259 aa12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 GTF2E1P29083 439 aaPredicted RBP12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 PTH1RQ03431 593 aa12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 FAM182BQ5T319 152 aa12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 DDX46Q7L014 1031 aaKnown RBP12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 PTF1AQ7RTS3 328 aa12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 EDC3Q96F86 508 aaKnown RBP12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 SETDB2Q96T68 719 aa12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 RBM8AQ9Y5S9 174 aaKnown RBP12.67□□□□□ -0.38
VIPAS39-203ENST00000448935 SLC5A1P13866 664 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 NUCB2P80303 420 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 KRT32Q14532 448 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 TTF1Q15361 905 aaPredicted RBP12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 SF3B3Q15393 1217 aaKnown RBP12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 SLC27A3Q5K4L6 730 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 SLC10A5Q5PT55 438 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 USPL1Q5W0Q7 1092 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 ZNF772Q68DY9 489 aaPredicted RBP12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 ZSCAN25Q6NSZ9 544 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 PRPF40BQ6NWY9 871 aaKnown RBP12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 KRT27Q7Z3Y8 459 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 LARP6Q9BRS8 491 aaKnown RBP12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 MYH7P12883 1935 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 BRWD3Q6RI45 1802 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 RNF113AO15541 343 aaKnown RBP12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 TAF5LO75529 589 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 KCNQ4P56696 695 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 TRAPPC3LQ5T215 181 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 CREB3L3Q68CJ9 461 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 INTS4Q96HW7 963 aaKnown RBP12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 CYP46A1Q9Y6A2 500 aa12.66□□□□□ -0.38
VIPAS39-203ENST00000448935 C4AP0C0L4 1744 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 FRAT2O75474 233 aaPredicted RBP12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 PTMSP20962 102 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 FGFR2P21802 821 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 ADORA1P30542 326 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 RFC4P35249 363 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 FKBP4Q02790 459 aaKnown RBP eCLIP12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 CUL4AQ13619 759 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 TSGA10IPQ3SY00 556 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 ZMYM1Q5SVZ6 1142 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 TBC1D9BQ66K14 1250 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 TPTE2Q6XPS3 522 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 TMX3Q96JJ7 454 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 GBP4Q96PP9 640 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 UPF3BQ9BZI7 483 aaKnown RBP12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 CASZ1Q86V15 1759 aa12.65□□□□□ -0.38
VIPAS39-203ENST00000448935 ARID4AP29374 1257 aaPredicted RBP12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 RAB3GAP1Q15042 981 aa12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 ERFEQ4G0M1 354 aa12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 VPS53Q5VIR6 699 aa12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 NBPF5PQ86XG9 351 aaPredicted RBP12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 ANKRD18AQ8IVF6 992 aa12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 DSCC1Q9BVC3 393 aa12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 BCL2L12Q9HB09 334 aa12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 ZSWIM6Q9HCJ5 1215 aa12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 ARIH1Q9Y4X5 557 aaPredicted RBP12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 NDUFB9Q9Y6M9 179 aa12.64□□□□□ -0.39
VIPAS39-203ENST00000448935 AKAP11Q9UKA4 1901 aa12.63□□□□□ -0.39
VIPAS39-203ENST00000448935 SLC27A2O14975 620 aa12.63□□□□□ -0.39
VIPAS39-203ENST00000448935 CASTP20810 708 aaKnown RBP12.63□□□□□ -0.39
VIPAS39-203ENST00000448935 RBM6P78332 1123 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms