RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 TRPM4Q8TD43 1214 aa16.01■□□□□ 0.15
PRPF40A-203ENST00000448428 COA1Q9GZY4 146 aa16.01■□□□□ 0.15
PRPF40A-203ENST00000448428 RIPOR2Q9Y4F9 1068 aa16.01■□□□□ 0.15
PRPF40A-203ENST00000448428 POLR2AP24928 1970 aaKnown RBP16■□□□□ 0.15
PRPF40A-203ENST00000448428 IRS2Q9Y4H2 1338 aa16■□□□□ 0.15
PRPF40A-203ENST00000448428 TRIM27P14373 513 aa16■□□□□ 0.15
PRPF40A-203ENST00000448428 INTS3Q68E01 1043 aaKnown RBP16■□□□□ 0.15
PRPF40A-203ENST00000448428 RSBN1LQ6PCB5 846 aaPredicted RBP16■□□□□ 0.15
PRPF40A-203ENST00000448428 FRAT1Q92837 279 aaPredicted RBP16■□□□□ 0.15
PRPF40A-203ENST00000448428 PGAP2Q9UHJ9 254 aa16■□□□□ 0.15
PRPF40A-203ENST00000448428 TNNQ9UQP3 1299 aa16■□□□□ 0.15
PRPF40A-203ENST00000448428 ZNF646O15015 1829 aaPredicted RBP15.99■□□□□ 0.15
PRPF40A-203ENST00000448428 UBTFL1P0CB47 393 aaPredicted RBP15.99■□□□□ 0.15
PRPF40A-203ENST00000448428 ATF7IPQ6VMQ6 1270 aa15.99■□□□□ 0.15
PRPF40A-203ENST00000448428 C15orf52Q6ZUT6 534 aaKnown RBP15.99■□□□□ 0.15
PRPF40A-203ENST00000448428 AGBL3Q8NEM8 1001 aa15.99■□□□□ 0.15
PRPF40A-203ENST00000448428 GMLQ99445 158 aa15.99■□□□□ 0.15
PRPF40A-203ENST00000448428 EGFRP00533 1210 aa15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 FMR1Q06787 632 aaKnown RBP eCLIP15.98■□□□□ 0.153e-7■■■■□ 19.7
PRPF40A-203ENST00000448428 TBC1D10BQ4KMP7 808 aaPredicted RBP15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 LRRC24Q50LG9 513 aa15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 RBM26Q5T8P6 1007 aaKnown RBP15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 KLHDC4Q8TBB5 520 aa15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 ZC3H15Q8WU90 426 aaKnown RBP15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 KLRG1Q96E93 195 aa15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 MEIS3Q99687 375 aa15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 MXD3Q9BW11 206 aa15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 CD209Q9NNX6 404 aa15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 CREBZFQ9NS37 354 aa15.98■□□□□ 0.15
PRPF40A-203ENST00000448428 ZNF609O15014 1411 aa15.97■□□□□ 0.15
PRPF40A-203ENST00000448428 RFX5P48382 616 aaPredicted RBP15.97■□□□□ 0.15
PRPF40A-203ENST00000448428 DACT2Q5SW24 774 aa15.97■□□□□ 0.15
PRPF40A-203ENST00000448428 STRIP1Q5VSL9 837 aa15.97■□□□□ 0.15
PRPF40A-203ENST00000448428 CLUAP1Q96AJ1 413 aa15.97■□□□□ 0.15
PRPF40A-203ENST00000448428 LRRFIP2Q9Y608 721 aaKnown RBP15.97■□□□□ 0.15
PRPF40A-203ENST00000448428 CEP350Q5VT06 3117 aa15.97■□□□□ 0.15
PRPF40A-203ENST00000448428 TRPM7Q96QT4 1865 aa15.97■□□□□ 0.15
PRPF40A-203ENST00000448428 MROH5Q6ZUA9 1318 aa15.96■□□□□ 0.15
PRPF40A-203ENST00000448428 TMEM88BA6NKF7 163 aa15.96■□□□□ 0.15
PRPF40A-203ENST00000448428 TRAF5O00463 557 aa15.96■□□□□ 0.15
PRPF40A-203ENST00000448428 ZNF280AP59817 542 aaPredicted RBP15.96■□□□□ 0.15
PRPF40A-203ENST00000448428 UBE4AQ14139 1066 aa15.96■□□□□ 0.15
PRPF40A-203ENST00000448428 TTLL5Q6EMB2 1281 aa15.96■□□□□ 0.15
PRPF40A-203ENST00000448428 FBXW7Q969H0 707 aa15.96■□□□□ 0.15
PRPF40A-203ENST00000448428 USP17L8P0C7I0 530 aa15.95■□□□□ 0.14
PRPF40A-203ENST00000448428 GTF2IP78347 998 aa15.95■□□□□ 0.14
PRPF40A-203ENST00000448428 KIF4BQ2VIQ3 1234 aa15.95■□□□□ 0.14
PRPF40A-203ENST00000448428 ZKSCAN2Q63HK3 967 aa15.95■□□□□ 0.14
PRPF40A-203ENST00000448428 ZNF804AQ7Z570 1209 aa15.95■□□□□ 0.14
PRPF40A-203ENST00000448428 GLIS2Q9BZE0 524 aaPredicted RBP15.95■□□□□ 0.14
PRPF40A-203ENST00000448428 HDAC5Q9UQL6 1122 aa15.95■□□□□ 0.14
PRPF40A-203ENST00000448428 GNAI3P08754 354 aa15.94■□□□□ 0.14
PRPF40A-203ENST00000448428 IL1R1P14778 569 aa15.94■□□□□ 0.14
PRPF40A-203ENST00000448428 PTPN12Q05209 780 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-203ENST00000448428 METTL24Q5JXM2 366 aa15.94■□□□□ 0.14
PRPF40A-203ENST00000448428 VGLL2Q8N8G2 317 aa15.94■□□□□ 0.14
PRPF40A-203ENST00000448428 EYA2O00167 538 aa15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 PDE8BO95263 885 aa15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 GYG1P46976 350 aa15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 CST9Q5W186 159 aa15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 CDC37L1Q7L3B6 337 aa15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 USP48Q86UV5 1035 aa15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 TMEM57Q8N5G2 664 aa15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 FAM84BQ96KN1 310 aaPredicted RBP15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 MKRN1Q9UHC7 482 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 ASTN2O75129 1339 aaPredicted RBP15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 MYO3BQ8WXR4 1341 aa15.93■□□□□ 0.14
PRPF40A-203ENST00000448428 SCARF1Q14162 830 aa15.92■□□□□ 0.14
PRPF40A-203ENST00000448428 DLK2Q6UY11 383 aa15.92■□□□□ 0.14
PRPF40A-203ENST00000448428 ATG9AQ7Z3C6 839 aa15.92■□□□□ 0.14
PRPF40A-203ENST00000448428 JMYQ8N9B5 988 aa15.92■□□□□ 0.14
PRPF40A-203ENST00000448428 MYOZ2Q9NPC6 264 aa15.92■□□□□ 0.14
PRPF40A-203ENST00000448428 HIBADHP31937 336 aaKnown RBP15.91■□□□□ 0.14
PRPF40A-203ENST00000448428 KIAA0825Q8IV33 1275 aa15.91■□□□□ 0.14
PRPF40A-203ENST00000448428 OGFOD1Q8N543 542 aa15.91■□□□□ 0.14
PRPF40A-203ENST00000448428 TDRD7Q8NHU6 1098 aaKnown RBP15.91■□□□□ 0.14
PRPF40A-203ENST00000448428 DCPSQ96C86 337 aaKnown RBP15.91■□□□□ 0.14
PRPF40A-203ENST00000448428 SASH1O94885 1247 aa15.9■□□□□ 0.14
PRPF40A-203ENST00000448428 KRT26Q7Z3Y9 468 aa15.9■□□□□ 0.14
PRPF40A-203ENST00000448428 FBXO33Q7Z6M2 555 aa15.9■□□□□ 0.14
PRPF40A-203ENST00000448428 CERS5Q8N5B7 392 aa15.9■□□□□ 0.14
PRPF40A-203ENST00000448428 SIL1Q9H173 461 aa15.9■□□□□ 0.14
PRPF40A-203ENST00000448428 PA2G4Q9UQ80 394 aaKnown RBP15.9■□□□□ 0.14
PRPF40A-203ENST00000448428 JAG2Q9Y219 1238 aa15.9■□□□□ 0.14
PRPF40A-203ENST00000448428 CNTNAP1P78357 1384 aa15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 CIAO1O76071 339 aa15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 CELF2O95319 508 aaKnown RBP15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 FGFR2P21802 821 aa15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 NBPF9Q3BBW0 867 aa15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 ANGEL2Q5VTE6 544 aaKnown RBP15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 DZIP1LQ8IYY4 767 aaKnown RBP15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 COPRSQ9NQ92 184 aa15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 GGA3Q9NZ52 723 aa15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 FBXO3Q9UK99 471 aa15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 ABT1Q9ULW3 272 aaKnown RBP15.89■□□□□ 0.13
PRPF40A-203ENST00000448428 RASSF10A6NK89 507 aa15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 ADM5C9JUS6 153 aa15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 SRGAP3O43295 1099 aa15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 GNAI2P04899 355 aa15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 RLBP1P12271 317 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms