RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 FKBP4Q02790 459 aaKnown RBP eCLIP10.05□□□□□ -0.8
NIPBL-202ENST00000448238 TAF12Q16514 161 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 XPCQ01831 940 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-202ENST00000448238 CCDC25Q86WR0 208 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 UBLCP1Q8WVY7 318 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-202ENST00000448238 NEK1Q96PY6 1258 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 ADCY5O95622 1261 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 PHBP35232 272 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 ZNF165P49910 485 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 UBASH3AP57075 661 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 PANK3Q9H999 370 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 OGFRQ9NZT2 677 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 SCOCQ9UIL1 159 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 TPX2Q9ULW0 747 aaKnown RBP10.05□□□□□ -0.8
NIPBL-202ENST00000448238 NUDCD3Q8IVD9 361 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 PLCD3Q8N3E9 789 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 GAS2L2Q8NHY3 880 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 KIFC2Q96AC6 838 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 ZSWIM4Q9H7M6 989 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 ZBTB41Q5SVQ8 909 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 FAM71BQ8TC56 605 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 WWC3Q9ULE0 1092 aa10.05□□□□□ -0.8
NIPBL-202ENST00000448238 CATIPQ7Z7H3 387 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 TRIM47Q96LD4 638 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 KRT8P05787 483 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 KRBA2Q6ZNG9 492 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 ZC3H6P61129 1189 aaKnown RBP10.04□□□□□ -0.8
NIPBL-202ENST00000448238 PDE3AQ14432 1141 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 SEL1L2Q5TEA6 688 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 CRACR2BQ8N4Y2 399 aaPredicted RBP10.04□□□□□ -0.8
NIPBL-202ENST00000448238 NLRP7Q8WX94 980 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 FAM204AQ9H8W3 233 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 TTC19Q6DKK2 380 aaPredicted RBP10.04□□□□□ -0.8
NIPBL-202ENST00000448238 TRIM8Q9BZR9 551 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 NBPF7P0C2Y1 421 aaPredicted RBP10.04□□□□□ -0.8
NIPBL-202ENST00000448238 MPHOSPH9Q99550 1183 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 NUB1Q9Y5A7 615 aa10.04□□□□□ -0.8
NIPBL-202ENST00000448238 B4DLN1 442 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 EVI5O60447 810 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 RAB11FIP3O75154 756 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 MRPL12P52815 198 aaKnown RBP10.03□□□□□ -0.8
NIPBL-202ENST00000448238 CHMP4BP1P59074 171 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 STAG1Q8WVM7 1258 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 TLDC2A0PJX2 215 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 SSRP1Q08945 709 aaKnown RBP10.03□□□□□ -0.8
NIPBL-202ENST00000448238 KCNA4P22459 653 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 NEK2P51955 445 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 SMAP1Q8IYB5 467 aaPredicted RBP10.03□□□□□ -0.8
NIPBL-202ENST00000448238 CABS1Q96KC9 395 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 TXLNGQ9NUQ3 528 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 SAMM50Q9Y512 469 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 TTC4O95801 387 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 CCDC159P0C7I6 412 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 SPDL1Q96EA4 605 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 ARHGAP42A6NI28 874 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 MAFGO15525 162 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 CEP19Q96LK0 163 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 CEP126Q9P2H0 1117 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 SKIP12755 728 aa10.03□□□□□ -0.8
NIPBL-202ENST00000448238 GOLGA6CA6NDK9 693 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 GOLGA6BA6NDN3 693 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 GOLGA6DP0CG33 693 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 OPTNQ96CV9 577 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 RILPQ96NA2 401 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 GOLGA6AQ9NYA3 693 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 CCDC144AA2RUR9 1427 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 PSMA7O14818 248 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 CA8P35219 290 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 PNMA8AQ86V59 439 aaPredicted RBP10.02□□□□□ -0.8
NIPBL-202ENST00000448238 SLC12A7Q9Y666 1083 aa10.02□□□□□ -0.8
NIPBL-202ENST00000448238 ABCC9O60706 1549 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 IDEP14735 1019 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 UBE2HP62256 183 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 FAM160A1Q05DH4 1040 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 ANKRD20A4Q4UJ75 823 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 ANKRD20A8PQ5CZ79 823 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 ANKRD20A2Q5SQ80 823 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 ANKRD20A1Q5TYW2 823 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 DDX42Q86XP3 938 aaKnown RBP eCLIP10.02□□□□□ -0.81
NIPBL-202ENST00000448238 MAP7D3Q8IWC1 876 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 CCDC42Q96M95 316 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 POLR3CQ9BUI4 534 aaPredicted RBP10.02□□□□□ -0.81
NIPBL-202ENST00000448238 AGTPBP1Q9UPW5 1226 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 ZBTB24O43167 697 aaPredicted RBP10.02□□□□□ -0.81
NIPBL-202ENST00000448238 PALM2Q8IXS6 379 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 KIFAP3Q92845 792 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 KIFC3Q9BVG8 833 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 SLC12A2P55011 1212 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 NAPBQ9H115 298 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 NUCKS1Q9H1E3 243 aaKnown RBP10.02□□□□□ -0.81
NIPBL-202ENST00000448238 TROVE2P10155 538 aaKnown RBP eCLIP10.02□□□□□ -0.81
NIPBL-202ENST00000448238 RASA3Q14644 834 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 ZNF444Q8N0Y2 327 aaPredicted RBP10.02□□□□□ -0.81
NIPBL-202ENST00000448238 MMRN2Q9H8L6 949 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 TNIKQ9UKE5 1360 aa10.02□□□□□ -0.81
NIPBL-202ENST00000448238 FSIP1Q8NA03 581 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 IFT81Q8WYA0 676 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 EFHD1Q9BUP0 239 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 RNF40O75150 1001 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 UAP1Q16222 522 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms