RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 CCER1Q8TC90 406 aaPredicted RBP9.55□□□□□ -0.88
HDAC9-216ENST00000446646 FMNL2Q96PY5 1086 aa9.55□□□□□ -0.88
HDAC9-216ENST00000446646 POLR3GLQ9BT43 218 aa9.55□□□□□ -0.88
HDAC9-216ENST00000446646 TEX13AQ9BXU3 409 aaPredicted RBP9.55□□□□□ -0.88
HDAC9-216ENST00000446646 LAMA2P24043 3122 aaKnown RBP9.55□□□□□ -0.88
HDAC9-216ENST00000446646 RIC1Q4ADV7 1423 aa9.55□□□□□ -0.88
HDAC9-216ENST00000446646 UBN2Q6ZU65 1347 aa9.55□□□□□ -0.88
HDAC9-216ENST00000446646 PRUNE2Q8WUY3 3088 aa9.54□□□□□ -0.88
HDAC9-216ENST00000446646 GTF2E1P29083 439 aaPredicted RBP9.54□□□□□ -0.88
HDAC9-216ENST00000446646 CDCA8Q53HL2 280 aa9.54□□□□□ -0.88
HDAC9-216ENST00000446646 RPGRQ92834 1020 aaKnown RBP9.54□□□□□ -0.88
HDAC9-216ENST00000446646 CDCA5Q96FF9 252 aa9.54□□□□□ -0.88
HDAC9-216ENST00000446646 RTFDC1Q9BY42 306 aaPredicted RBP9.54□□□□□ -0.88
HDAC9-216ENST00000446646 ZNF652Q9Y2D9 606 aa9.54□□□□□ -0.88
HDAC9-216ENST00000446646 TTC28Q96AY4 2481 aa9.54□□□□□ -0.88
HDAC9-216ENST00000446646 PAPPA2Q9BXP8 1791 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 H7C1D1 291 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 PSMD14O00487 310 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 GPTP24298 496 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 KIAA2012Q0VF49 1180 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 SUSD4Q5VX71 490 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 NPM2Q86SE8 214 aaKnown RBP9.53□□□□□ -0.88
HDAC9-216ENST00000446646 CRAMP1Q96RY5 1269 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 ATP6V0A2Q9Y487 856 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 KIF7Q2M1P5 1343 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 CDHR2Q9BYE9 1310 aa9.53□□□□□ -0.88
HDAC9-216ENST00000446646 UBE2Q2LH0YL09 131 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 TEFQ10587 303 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 PRAMEF18Q5VWM3 479 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 MORC1Q86VD1 984 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 NGEFQ8N5V2 710 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 ZDHHC16Q969W1 377 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 RBM17Q96I25 401 aaKnown RBP9.52□□□□□ -0.89
HDAC9-216ENST00000446646 PANK3Q9H999 370 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 GGA3Q9NZ52 723 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 RBM27Q9P2N5 1060 aaKnown RBP9.52□□□□□ -0.89
HDAC9-216ENST00000446646 TIMELESSQ9UNS1 1208 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 ABCC4O15439 1325 aa9.52□□□□□ -0.89
HDAC9-216ENST00000446646 RTL9Q8NET4 1388 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 DUOX1Q9NRD9 1551 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 SIPA1L3O60292 1781 aaPredicted RBP9.51□□□□□ -0.89
HDAC9-216ENST00000446646 BTBD11A6QL63 1104 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 FKTNO75072 461 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 PTPREP23469 700 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 TNIP1Q15025 636 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 E2F4Q16254 413 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 TTLL7Q6ZT98 887 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 OTOP1Q7RTM1 612 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 TRIM17Q9Y577 477 aa9.51□□□□□ -0.89
HDAC9-216ENST00000446646 TK2O00142 265 aa9.5□□□□□ -0.89
HDAC9-216ENST00000446646 NTSR2O95665 410 aa9.5□□□□□ -0.89
HDAC9-216ENST00000446646 GRIPAP1Q4V328 841 aa9.5□□□□□ -0.89
HDAC9-216ENST00000446646 DPP8Q6V1X1 898 aaPredicted RBP9.5□□□□□ -0.89
HDAC9-216ENST00000446646 HOMEZQ8IX15 550 aa9.5□□□□□ -0.89
HDAC9-216ENST00000446646 DCPSQ96C86 337 aaKnown RBP9.5□□□□□ -0.89
HDAC9-216ENST00000446646 ADAM33Q9BZ11 813 aa9.5□□□□□ -0.89
HDAC9-216ENST00000446646 DBNDD1Q9H9R9 158 aa9.5□□□□□ -0.89
HDAC9-216ENST00000446646 CEMIPQ8WUJ3 1361 aa9.5□□□□□ -0.89
HDAC9-216ENST00000446646 SOX1O00570 391 aaPredicted RBP9.49□□□□□ -0.89
HDAC9-216ENST00000446646 TM4SF4P48230 202 aa9.49□□□□□ -0.89
HDAC9-216ENST00000446646 MPNDQ8N594 471 aa9.49□□□□□ -0.89
HDAC9-216ENST00000446646 DPF2Q92785 391 aa9.49□□□□□ -0.89
HDAC9-216ENST00000446646 PCDHGA10Q9Y5H3 936 aa9.49□□□□□ -0.89
HDAC9-216ENST00000446646 GNAT3A8MTJ3 354 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 SNRPA1P09661 255 aaKnown RBP9.48□□□□□ -0.89
HDAC9-216ENST00000446646 KIF4BQ2VIQ3 1234 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 NOM1Q5C9Z4 860 aaKnown RBP9.48□□□□□ -0.89
HDAC9-216ENST00000446646 ANGEL2Q5VTE6 544 aaKnown RBP9.48□□□□□ -0.89
HDAC9-216ENST00000446646 SULF1Q8IWU6 871 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 ZNF428Q96B54 188 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 PHACTR3Q96KR7 559 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 NYXQ9GZU5 481 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 VPS33BQ9H267 617 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 ZBTB3Q9H5J0 574 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 COL4A1P02462 1669 aa9.48□□□□□ -0.89
HDAC9-216ENST00000446646 MYCP01106 439 aaPredicted RBP9.47□□□□□ -0.89
HDAC9-216ENST00000446646 SCARF1Q14162 830 aa9.47□□□□□ -0.89
HDAC9-216ENST00000446646 TYW1BQ6NUM6 668 aa9.47□□□□□ -0.89
HDAC9-216ENST00000446646 SP8Q8IXZ3 490 aa9.47□□□□□ -0.89
HDAC9-216ENST00000446646 ARMC5Q96C12 935 aa9.47□□□□□ -0.89
HDAC9-216ENST00000446646 PRO3102Q9H379 93 aa9.47□□□□□ -0.89
HDAC9-216ENST00000446646 FZD1Q9UP38 647 aa9.47□□□□□ -0.89
HDAC9-216ENST00000446646 PTPN22Q9Y2R2 807 aa9.47□□□□□ -0.89
HDAC9-216ENST00000446646 CDH23Q9H251 3354 aa9.47□□□□□ -0.89
HDAC9-216ENST00000446646 INTS3Q68E01 1043 aaKnown RBP9.46□□□□□ -0.9
HDAC9-216ENST00000446646 ZNF34Q8IZ26 560 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 SUPT20HQ8NEM7 779 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 CD99L2Q8TCZ2 262 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 DDX12PQ92771 950 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 LRCH3Q96II8 777 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 MIS18AQ9NYP9 233 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 POLLQ9UGP5 575 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 VPS9D1Q9Y2B5 631 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 MAP3K15Q6ZN16 1313 aa9.46□□□□□ -0.9
HDAC9-216ENST00000446646 WTIPA6NIX2 430 aaPredicted RBP9.45□□□□□ -0.9
HDAC9-216ENST00000446646 HRO43593 1189 aa9.45□□□□□ -0.9
HDAC9-216ENST00000446646 HCLS1P14317 486 aaPredicted RBP9.45□□□□□ -0.9
HDAC9-216ENST00000446646 PTPN12Q05209 780 aaKnown RBP9.45□□□□□ -0.9
HDAC9-216ENST00000446646 DCTN1Q14203 1278 aa9.45□□□□□ -0.9
HDAC9-216ENST00000446646 MCM10Q7L590 875 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms