RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 DDR2Q16832 855 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 TREML1Q86YW5 311 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 SYNPOQ8N3V7 929 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 SENP7Q9BQF6 1050 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 PAGR1Q9BTK6 254 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 RSRP1Q9BUV0 290 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 NOC4LQ9BVI4 516 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 QTRT2Q9H974 415 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 UBP1Q9NZI7 540 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 CABP1Q9NZU7 370 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 ZIM2Q9NZV7 527 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 AKAP2Q9Y2D5 859 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 PTCH2Q9Y6C5 1203 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 SERTM1A2A2V5 107 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 INHAP05111 366 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 RLBP1P12271 317 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 SCTRP47872 440 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 HLTFQ14527 1009 aaKnown RBP eCLIP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 VPS72Q15906 364 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 GRAMD1BQ3KR37 738 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 C2orf27AQ580R0 203 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 USPL1Q5W0Q7 1092 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ANO1Q5XXA6 986 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ZNF280DQ6N043 979 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ZNF438Q7Z4V0 828 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 NIM1KQ8IY84 436 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 CELF2-AS1Q8N7Q2 184 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ABCF1Q8NE71 845 aaKnown RBP eCLIP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 NPHS2Q9NP85 383 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 NOB1Q9ULX3 412 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 A6NJY4 79 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ZNF500O60304 480 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 MCCP23508 829 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ITKQ08881 620 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ZBTB46Q86UZ6 589 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ETFBKMTQ8IXQ9 262 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 FOXJ1Q92949 421 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 MYO19Q96H55 970 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 EAF1Q96JC9 268 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 TMEM74Q96NL1 305 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 IPO9Q96P70 1041 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 KCTD15Q96SI1 283 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 SPSB2Q99619 263 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 PPT2Q9UMR5 302 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 FNDC3AQ9Y2H6 1198 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 TLR3O15455 904 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 POLR3DP05423 398 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 GTF2E1P29083 439 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 TRAPPC10P48553 1259 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ARID5BQ14865 1188 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 NFE2Q16621 373 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 SEZ6Q53EL9 994 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 CNPY4Q8N129 248 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ZSWIM2Q8NEG5 633 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 SNX29Q8TEQ0 813 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 BAP1Q92560 729 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 ZBED2Q9BTP6 218 aa2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 CDKN2AIPQ9NXV6 580 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 MAP3K20Q9NYL2 800 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-208ENST00000444458 VIL1P09327 827 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 PMLP29590 882 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 PPP4CP60510 307 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 PICALMQ13492 652 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 TLR1Q15399 786 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 SLC4A8Q2Y0W8 1093 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 CNNM4Q6P4Q7 775 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 VASH1Q7L8A9 365 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 ALDH16A1Q8IZ83 802 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 NBPF15Q8N660 670 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 GOLM1Q8NBJ4 401 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 GGNBP2Q9H3C7 697 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 FOXD3Q9UJU5 478 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 GOLGA8CPA6NN73 597 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 KATNA1O75449 491 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 BDNFP23560 247 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 SOX9P48436 509 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 RAB27AP51159 221 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 TTC39BQ5VTQ0 682 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 PCNX4Q63HM2 1172 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 CYP2U1Q7Z449 544 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 MYRIPQ8NFW9 859 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 JADE2Q9NQC1 790 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 SCHIP1Q9P0W5 487 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 PDE8AO60658 829 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 FBXO24O75426 580 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 DXOO77932 396 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 FCGRTP55899 365 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 MLC1Q15049 377 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 DALRD3Q5D0E6 543 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 PERM1Q5SV97 790 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 SCLT1Q96NL6 688 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 NT5C1AQ9BXI3 368 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 ETNK1Q9HBU6 452 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 RAB6BQ9NRW1 208 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 ERVH48-1M5A8F1 160 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 TBX3O15119 743 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 MAN1A1P33908 653 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 SCNN1DP51172 638 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 LSM11P83369 360 aaKnown RBP eCLIP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 RTN1Q16799 776 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms