RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 CNOT7Q9UIV1 285 aaKnown RBP9.93□□□□□ -0.82
CD44-211ENST00000442151 RAD17O75943 681 aa9.93□□□□□ -0.82
CD44-211ENST00000442151 PHAXQ9H814 394 aaKnown RBP9.93□□□□□ -0.82
CD44-211ENST00000442151 MAP3K2Q9Y2U5 619 aa9.93□□□□□ -0.82
CD44-211ENST00000442151 RTL5Q5HYW3 569 aaPredicted RBP9.92□□□□□ -0.82
CD44-211ENST00000442151 CELF1Q92879 486 aaKnown RBP9.92□□□□□ -0.82
CD44-211ENST00000442151 HHIPL1Q96JK4 782 aa9.92□□□□□ -0.82
CD44-211ENST00000442151 BOLA1Q9Y3E2 137 aa9.92□□□□□ -0.82
CD44-211ENST00000442151 WDR33Q9C0J8 1336 aaKnown RBP9.92□□□□□ -0.82
CD44-211ENST00000442151 PI4KAP2A4QPH2 592 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 MAP2K2P36507 400 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 IGHMBP2P38935 993 aaKnown RBP9.91□□□□□ -0.82
CD44-211ENST00000442151 VEGFBP49765 207 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 GPSM2P81274 684 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 PAXIP1Q6ZW49 1069 aaPredicted RBP9.91□□□□□ -0.82
CD44-211ENST00000442151 PI4KAP1Q8N8J0 262 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 TBC1D16Q8TBP0 767 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 DCPSQ96C86 337 aaKnown RBP9.91□□□□□ -0.82
CD44-211ENST00000442151 XDHP47989 1333 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 PCNTO95613 3336 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 PODNQ7Z5L7 613 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 ANKRD2Q9GZV1 360 aa9.91□□□□□ -0.82
CD44-211ENST00000442151 CA12O43570 354 aa9.9□□□□□ -0.82
CD44-211ENST00000442151 ECE2O60344 883 aa9.9□□□□□ -0.82
CD44-211ENST00000442151 UFL1O94874 794 aa9.9□□□□□ -0.82
CD44-211ENST00000442151 CTSWP56202 376 aa9.9□□□□□ -0.82
CD44-211ENST00000442151 ZNF467Q7Z7K2 595 aaPredicted RBP9.9□□□□□ -0.82
CD44-211ENST00000442151 AGBL3Q8NEM8 1001 aa9.9□□□□□ -0.82
CD44-211ENST00000442151 BSDC1Q9NW68 430 aaPredicted RBP9.9□□□□□ -0.82
CD44-211ENST00000442151 POLLQ9UGP5 575 aa9.9□□□□□ -0.82
CD44-211ENST00000442151 TLL2Q9Y6L7 1015 aa9.9□□□□□ -0.82
CD44-211ENST00000442151 VIL1P09327 827 aaKnown RBP9.89□□□□□ -0.83
CD44-211ENST00000442151 FKBP5Q13451 457 aaPredicted RBP9.89□□□□□ -0.83
CD44-211ENST00000442151 MICALL2Q8IY33 904 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 C2orf69Q8N8R5 385 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 DBNDD1Q9H9R9 158 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 WBP1LQ9NX94 342 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 LEMD3Q9Y2U8 911 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 RTL9Q8NET4 1388 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 H7C1W4 665 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 PSMD14O00487 310 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 CELF2O95319 508 aaKnown RBP9.89□□□□□ -0.83
CD44-211ENST00000442151 COL13A1Q5TAT6 717 aaPredicted RBP9.89□□□□□ -0.83
CD44-211ENST00000442151 TSPYL6Q8N831 410 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 LINS1Q8NG48 757 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 GPR101Q96P66 508 aaPredicted RBP9.89□□□□□ -0.83
CD44-211ENST00000442151 MPHOSPH8Q99549 860 aa9.89□□□□□ -0.83
CD44-211ENST00000442151 ADAMTSL1Q8N6G6 1762 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 NEURL1BA8MQ27 555 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 FLIIQ13045 1269 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 SULF1Q8IWU6 871 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 OGFOD1Q8N543 542 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 TTLL11Q8NHH1 800 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 DNAAF4Q8WXU2 420 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 TSR2Q969E8 191 aaKnown RBP9.88□□□□□ -0.83
CD44-211ENST00000442151 CAPNS2Q96L46 248 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 PLA2G12BQ9BX93 195 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 SEC31BQ9NQW1 1179 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 LAMB2P55268 1798 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 MYO3BQ8WXR4 1341 aa9.88□□□□□ -0.83
CD44-211ENST00000442151 USP17L3A6NCW0 530 aa9.87□□□□□ -0.83
CD44-211ENST00000442151 USP17L4A6NCW7 530 aa9.87□□□□□ -0.83
CD44-211ENST00000442151 YDJCA8MPS7 323 aa9.87□□□□□ -0.83
CD44-211ENST00000442151 KCNJ4P48050 445 aa9.87□□□□□ -0.83
CD44-211ENST00000442151 RSBN1LQ6PCB5 846 aaPredicted RBP9.87□□□□□ -0.83
CD44-211ENST00000442151 USP17L1Q7RTZ2 530 aa9.87□□□□□ -0.83
CD44-211ENST00000442151 USP48Q86UV5 1035 aa9.87□□□□□ -0.83
CD44-211ENST00000442151 CCDC102AQ96A19 550 aa9.87□□□□□ -0.83
CD44-211ENST00000442151 COA1Q9GZY4 146 aa9.87□□□□□ -0.83
CD44-211ENST00000442151 ANKRD18BA2A2Z9 1011 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 VAMP4O75379 141 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 RGS20O76081 388 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 IGKV5-2P06315 115 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 NOGQ13253 232 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 GCKRQ14397 625 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 CST9Q5W186 159 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 HDAC9Q9UKV0 1011 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 FOXN1O15353 648 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 USP17L8P0C7I0 530 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 CCT4P50991 539 aaKnown RBP9.86□□□□□ -0.83
CD44-211ENST00000442151 LSM11P83369 360 aaKnown RBP eCLIP9.86□□□□□ -0.83
CD44-211ENST00000442151 KIF4BQ2VIQ3 1234 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 RBM26Q5T8P6 1007 aaKnown RBP9.86□□□□□ -0.83
CD44-211ENST00000442151 UBE3BQ7Z3V4 1068 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 KRT26Q7Z3Y9 468 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 SAPCD2Q86UD0 394 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 DDX60Q8IY21 1712 aaKnown RBP9.86□□□□□ -0.83
CD44-211ENST00000442151 ZNF428Q96B54 188 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 GLIS2Q9BZE0 524 aaPredicted RBP9.86□□□□□ -0.83
CD44-211ENST00000442151 ZNF408Q9H9D4 720 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 MINPP1Q9UNW1 487 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 FANCIQ9NVI1 1328 aa9.86□□□□□ -0.83
CD44-211ENST00000442151 CACNA1FO60840 1977 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 COL4A5P29400 1685 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 TRAF5O00463 557 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 FKBP1BP68106 108 aa9.85□□□□□ -0.83
CD44-211ENST00000442151 EXOSC9Q06265 439 aaKnown RBP9.85□□□□□ -0.83
CD44-211ENST00000442151 IFIT5Q13325 482 aaKnown RBP9.85□□□□□ -0.83
CD44-211ENST00000442151 TBC1D10BQ4KMP7 808 aaPredicted RBP9.85□□□□□ -0.83
CD44-211ENST00000442151 CCDC184Q52MB2 194 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms