RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SHTN1A0MZ66 631 aa19.03■□□□□ 0.64
LIMS3-201ENST00000437679 ITGBL1O95965 494 aaPredicted RBP19.03■□□□□ 0.64
LIMS3-201ENST00000437679 TRIM27P14373 513 aa19.03■□□□□ 0.64
LIMS3-201ENST00000437679 KLRK1P26718 216 aa19.03■□□□□ 0.64
LIMS3-201ENST00000437679 AGBL3Q8NEM8 1001 aa19.03■□□□□ 0.64
LIMS3-201ENST00000437679 PUS3Q9BZE2 481 aaKnown RBP19.03■□□□□ 0.64
LIMS3-201ENST00000437679 MROH5Q6ZUA9 1318 aa19.02■□□□□ 0.64
LIMS3-201ENST00000437679 SNAP23O00161 211 aa19.02■□□□□ 0.64
LIMS3-201ENST00000437679 ZKSCAN2Q63HK3 967 aa19.02■□□□□ 0.64
LIMS3-201ENST00000437679 C15orf52Q6ZUT6 534 aaKnown RBP19.02■□□□□ 0.64
LIMS3-201ENST00000437679 TRPM4Q8TD43 1214 aa19.02■□□□□ 0.64
LIMS3-201ENST00000437679 ZC3H15Q8WU90 426 aaKnown RBP19.02■□□□□ 0.64
LIMS3-201ENST00000437679 FBXW7Q969H0 707 aa19.02■□□□□ 0.64
LIMS3-201ENST00000437679 RIPOR2Q9Y4F9 1068 aa19.02■□□□□ 0.64
LIMS3-201ENST00000437679 SAMD7Q7Z3H4 446 aa19.01■□□□□ 0.63
LIMS3-201ENST00000437679 ZNF804AQ7Z570 1209 aa19.01■□□□□ 0.63
LIMS3-201ENST00000437679 DNAJC5GQ8N7S2 189 aa19.01■□□□□ 0.63
LIMS3-201ENST00000437679 MEIS3Q99687 375 aa19.01■□□□□ 0.63
LIMS3-201ENST00000437679 ZNF609O15014 1411 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 GNAI3P08754 354 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 HIRAP54198 1017 aaPredicted RBP19■□□□□ 0.63
LIMS3-201ENST00000437679 UBE4AQ14139 1066 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 TBC1D10BQ4KMP7 808 aaPredicted RBP19■□□□□ 0.63
LIMS3-201ENST00000437679 LRRC24Q50LG9 513 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 METTL24Q5JXM2 366 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 RBM26Q5T8P6 1007 aaKnown RBP19■□□□□ 0.63
LIMS3-201ENST00000437679 STRIP1Q5VSL9 837 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 CLUAP1Q96AJ1 413 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 CD209Q9NNX6 404 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 CREBZFQ9NS37 354 aa19■□□□□ 0.63
LIMS3-201ENST00000437679 LRRFIP2Q9Y608 721 aaKnown RBP19■□□□□ 0.63
LIMS3-201ENST00000437679 DACT2Q5SW24 774 aa18.99■□□□□ 0.63
LIMS3-201ENST00000437679 TTLL5Q6EMB2 1281 aa18.99■□□□□ 0.63
LIMS3-201ENST00000437679 KLHDC4Q8TBB5 520 aa18.99■□□□□ 0.63
LIMS3-201ENST00000437679 KLRG1Q96E93 195 aa18.99■□□□□ 0.63
LIMS3-201ENST00000437679 PGAP2Q9UHJ9 254 aa18.99■□□□□ 0.63
LIMS3-201ENST00000437679 TNNQ9UQP3 1299 aa18.99■□□□□ 0.63
LIMS3-201ENST00000437679 MYO3BQ8WXR4 1341 aa18.99■□□□□ 0.63
LIMS3-201ENST00000437679 IRS2Q9Y4H2 1338 aa18.99■□□□□ 0.63
LIMS3-201ENST00000437679 TMEM88BA6NKF7 163 aa18.98■□□□□ 0.63
LIMS3-201ENST00000437679 USP17L8P0C7I0 530 aa18.98■□□□□ 0.63
LIMS3-201ENST00000437679 KIF4BQ2VIQ3 1234 aa18.98■□□□□ 0.63
LIMS3-201ENST00000437679 GMLQ99445 158 aa18.98■□□□□ 0.63
LIMS3-201ENST00000437679 RFX5P48382 616 aaPredicted RBP18.97■□□□□ 0.63
LIMS3-201ENST00000437679 ZNF280AP59817 542 aaPredicted RBP18.97■□□□□ 0.63
LIMS3-201ENST00000437679 GTF2IP78347 998 aa18.97■□□□□ 0.63
LIMS3-201ENST00000437679 FTSJ3Q8IY81 847 aaKnown RBP18.97■□□□□ 0.63
LIMS3-201ENST00000437679 EYA2O00167 538 aa18.96■□□□□ 0.63
LIMS3-201ENST00000437679 EGFRP00533 1210 aa18.96■□□□□ 0.63
LIMS3-201ENST00000437679 PTPN12Q05209 780 aaKnown RBP18.96■□□□□ 0.63
LIMS3-201ENST00000437679 OGFOD1Q8N543 542 aa18.96■□□□□ 0.63
LIMS3-201ENST00000437679 TMEM57Q8N5G2 664 aa18.96■□□□□ 0.63
LIMS3-201ENST00000437679 MXD3Q9BW11 206 aa18.96■□□□□ 0.63
LIMS3-201ENST00000437679 TRAF5O00463 557 aa18.95■□□□□ 0.62
LIMS3-201ENST00000437679 PDE8BO95263 885 aa18.95■□□□□ 0.62
LIMS3-201ENST00000437679 IL1R1P14778 569 aa18.95■□□□□ 0.62
LIMS3-201ENST00000437679 CDC37L1Q7L3B6 337 aa18.95■□□□□ 0.62
LIMS3-201ENST00000437679 GLIS2Q9BZE0 524 aaPredicted RBP18.95■□□□□ 0.62
LIMS3-201ENST00000437679 MYOZ2Q9NPC6 264 aa18.95■□□□□ 0.62
LIMS3-201ENST00000437679 FBXO3Q9UK99 471 aa18.95■□□□□ 0.62
LIMS3-201ENST00000437679 GNAI2P04899 355 aa18.94■□□□□ 0.62
LIMS3-201ENST00000437679 HIBADHP31937 336 aaKnown RBP18.94■□□□□ 0.62
LIMS3-201ENST00000437679 MMP14P50281 582 aa18.94■□□□□ 0.62
LIMS3-201ENST00000437679 VPS37DQ86XT2 251 aa18.94■□□□□ 0.62
LIMS3-201ENST00000437679 DZIP1LQ8IYY4 767 aaKnown RBP18.94■□□□□ 0.62
LIMS3-201ENST00000437679 VGLL2Q8N8G2 317 aa18.94■□□□□ 0.62
LIMS3-201ENST00000437679 DCPSQ96C86 337 aaKnown RBP18.94■□□□□ 0.62
LIMS3-201ENST00000437679 HDAC9Q9UKV0 1011 aa18.94■□□□□ 0.62
LIMS3-201ENST00000437679 TRPM7Q96QT4 1865 aa18.94■□□□□ 0.62
LIMS3-201ENST00000437679 POLR2AP24928 1970 aaKnown RBP18.93■□□□□ 0.62
LIMS3-201ENST00000437679 ZNF646O15015 1829 aaPredicted RBP18.93■□□□□ 0.62
LIMS3-201ENST00000437679 CIAO1O76071 339 aa18.93■□□□□ 0.62
LIMS3-201ENST00000437679 GYG1P46976 350 aa18.93■□□□□ 0.62
LIMS3-201ENST00000437679 FMR1Q06787 632 aaKnown RBP eCLIP18.93■□□□□ 0.62
LIMS3-201ENST00000437679 PUM3Q15397 648 aaKnown RBP18.93■□□□□ 0.62
LIMS3-201ENST00000437679 CAVIN4Q5BKX8 364 aa18.93■□□□□ 0.62
LIMS3-201ENST00000437679 FAM84BQ96KN1 310 aaPredicted RBP18.93■□□□□ 0.62
LIMS3-201ENST00000437679 SIL1Q9H173 461 aa18.93■□□□□ 0.62
LIMS3-201ENST00000437679 SCARF1Q14162 830 aa18.92■□□□□ 0.62
LIMS3-201ENST00000437679 KRT26Q7Z3Y9 468 aa18.92■□□□□ 0.62
LIMS3-201ENST00000437679 USP48Q86UV5 1035 aa18.92■□□□□ 0.62
LIMS3-201ENST00000437679 KIAA0825Q8IV33 1275 aa18.92■□□□□ 0.62
LIMS3-201ENST00000437679 MKRN1Q9UHC7 482 aaKnown RBP18.92■□□□□ 0.62
LIMS3-201ENST00000437679 ABT1Q9ULW3 272 aaKnown RBP18.92■□□□□ 0.62
LIMS3-201ENST00000437679 SRGAP3O43295 1099 aa18.91■□□□□ 0.62
LIMS3-201ENST00000437679 SASH1O94885 1247 aa18.91■□□□□ 0.62
LIMS3-201ENST00000437679 IFIT1P09914 478 aaKnown RBP18.91■□□□□ 0.62
LIMS3-201ENST00000437679 ATG9AQ7Z3C6 839 aa18.91■□□□□ 0.62
LIMS3-201ENST00000437679 ITPRIPQ8IWB1 547 aa18.91■□□□□ 0.62
LIMS3-201ENST00000437679 TDRD7Q8NHU6 1098 aaKnown RBP18.91■□□□□ 0.62
LIMS3-201ENST00000437679 COPRSQ9NQ92 184 aa18.91■□□□□ 0.62
LIMS3-201ENST00000437679 GGA3Q9NZ52 723 aa18.91■□□□□ 0.62
LIMS3-201ENST00000437679 CEP126Q9P2H0 1117 aa18.91■□□□□ 0.62
LIMS3-201ENST00000437679 CELF2O95319 508 aaKnown RBP18.9■□□□□ 0.62
LIMS3-201ENST00000437679 SLC5A1P13866 664 aa18.9■□□□□ 0.62
LIMS3-201ENST00000437679 IL15P40933 162 aaPredicted RBP18.9■□□□□ 0.62
LIMS3-201ENST00000437679 FKBP1AP62942 108 aaKnown RBP18.9■□□□□ 0.62
LIMS3-201ENST00000437679 MTX1Q13505 466 aa18.9■□□□□ 0.62
LIMS3-201ENST00000437679 FBXO33Q7Z6M2 555 aa18.9■□□□□ 0.62
LIMS3-201ENST00000437679 SULF1Q8IWU6 871 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms