RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CATIPQ7Z7H3 387 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 FSIP1Q8NA03 581 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 XRCC6P12956 609 aaKnown RBP eCLIP8.11□□□□□ -1.118e-6■■□□□ 13.6
VPS53-204ENST00000437048 MTIF2P46199 727 aaKnown RBP8.11□□□□□ -1.11
VPS53-204ENST00000437048 PSME1Q06323 249 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 FAM71BQ8TC56 605 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 N4BP3O15049 544 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 TMC6Q7Z403 805 aa8.11□□□□□ -1.11
VPS53-204ENST00000437048 DZIP1Q86YF9 867 aaKnown RBP8.11□□□□□ -1.11
VPS53-204ENST00000437048 EPRSP07814 1512 aaKnown RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.1□□□□□ -1.114e-6■■■■□ 21.2
VPS53-204ENST00000437048 VEZTQ9HBM0 779 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 MCM6Q14566 821 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 ARHGAP5Q13017 1502 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 ASXL1Q8IXJ9 1541 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 TDRD12Q587J7 1177 aaKnown RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 CEP85LQ5SZL2 805 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 GKAP1Q5VSY0 366 aaPredicted RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 CCDC42Q96M95 316 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 ATP2A3Q93084 1043 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 RRP36Q96EU6 259 aaKnown RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 GBP5Q96PP8 586 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 ARHGAP31Q2M1Z3 1444 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 RNF40O75150 1001 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 SYKP43405 635 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 RILPL1Q5EBL4 403 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 VTI1AQ96AJ9 217 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 GOPCQ9HD26 462 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 NOB1Q9ULX3 412 aaKnown RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 ZNF330Q9Y3S2 320 aaPredicted RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 RPL13P26373 211 aaKnown RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 SSRP1Q08945 709 aaKnown RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 EXOC4Q96A65 974 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 NPC1L1Q9UHC9 1359 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 MTHFSP49914 203 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 LMNB2Q03252 620 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 DYNC1I2Q13409 638 aaKnown RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 CCDC96Q2M329 555 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 ARHGAP18Q8N392 663 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 PDCD7Q8N8D1 485 aaKnown RBP8.1□□□□□ -1.11
VPS53-204ENST00000437048 TXNDC16Q9P2K2 825 aa8.1□□□□□ -1.11
VPS53-204ENST00000437048 MAN1A1P33908 653 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 PRXQ9BXM0 1461 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 LMNB1P20700 586 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 SYT1P21579 422 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 CHMP4BP1P59074 171 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 DBN1Q16643 649 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 RAB11FIP4Q86YS3 637 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 LTV1Q96GA3 475 aaPredicted RBP8.09□□□□□ -1.11
VPS53-204ENST00000437048 TPCN1Q9ULQ1 816 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 EFCAB8A8MWE9 144 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 GOLGA8KD6RF30 607 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 GFAPP14136 432 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 AIDAQ96BJ3 306 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 KRT23Q9C075 422 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 ACTR5Q9H9F9 607 aaPredicted RBP8.09□□□□□ -1.11
VPS53-204ENST00000437048 EXOC1Q9NV70 894 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 KIF24Q5T7B8 1368 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 MAP3K12Q12852 859 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 UBL4BQ8N7F7 174 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 CABS1Q96KC9 395 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 MXRA7P84157 204 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 RABEP2Q9H5N1 569 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 ZNF189O75820 626 aaPredicted RBP8.09□□□□□ -1.11
VPS53-204ENST00000437048 LMNAP02545 664 aaKnown RBP8.09□□□□□ -1.11
VPS53-204ENST00000437048 UBE4AQ14139 1066 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 LRRD1A4D1F6 860 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 CETN3O15182 167 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 GNAT2P19087 354 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 CCDC170Q8IYT3 715 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 SLC12A7Q9Y666 1083 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 NAA16Q6N069 864 aaPredicted RBP8.09□□□□□ -1.11
VPS53-204ENST00000437048 CNOT10Q9H9A5 744 aaKnown RBP8.09□□□□□ -1.11
VPS53-204ENST00000437048 ZNF652Q9Y2D9 606 aa8.09□□□□□ -1.11
VPS53-204ENST00000437048 FANCD2Q9BXW9 1451 aa8.09□□□□□ -1.12
VPS53-204ENST00000437048 RNF8O76064 485 aa8.09□□□□□ -1.12
VPS53-204ENST00000437048 TRIM42Q8IWZ5 723 aa8.09□□□□□ -1.12
VPS53-204ENST00000437048 NRBF2Q96F24 287 aa8.09□□□□□ -1.12
VPS53-204ENST00000437048 NAPGQ99747 312 aaPredicted RBP8.09□□□□□ -1.12
VPS53-204ENST00000437048 GRIN2BQ13224 1484 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 POTEB3A0JP26 581 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 B4DLN1 442 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 GAS8O95995 478 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 MRPL12P52815 198 aaKnown RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 POTEBQ6S5H4 581 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 MCUR1Q96AQ8 359 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 RMDN2Q96LZ7 410 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 ANKRD36BQ8N2N9 1353 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 PDCD2Q16342 344 aaPredicted RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 SLFNL1Q499Z3 407 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 MCTP2Q6DN12 878 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 EIF3CLB5ME19 914 aaKnown RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 EIF3CQ99613 913 aaKnown RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 RPUSD2Q8IZ73 545 aaKnown RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 TSPYL2Q9H2G4 693 aaPredicted RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 ATP5HO75947 161 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 CCDC82Q8N4S0 544 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 TRIML1Q8N9V2 468 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 KDM5DQ9BY66 1539 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 CCDC160A6NGH7 325 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms