RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 EPHX2P34913 555 aa14.3□□□□□ -0.12
COL28A1-203ENST00000435823 PODNQ7Z5L7 613 aa14.3□□□□□ -0.12
COL28A1-203ENST00000435823 HELBQ8NG08 1087 aaPredicted RBP14.3□□□□□ -0.12
COL28A1-203ENST00000435823 PUS3Q9BZE2 481 aaKnown RBP14.3□□□□□ -0.12
COL28A1-203ENST00000435823 COA1Q9GZY4 146 aa14.3□□□□□ -0.12
COL28A1-203ENST00000435823 MROH5Q6ZUA9 1318 aa14.3□□□□□ -0.12
COL28A1-203ENST00000435823 A0A1B0GUL6 1792 aa14.29□□□□□ -0.12
COL28A1-203ENST00000435823 PSMD14O00487 310 aa14.29□□□□□ -0.12
COL28A1-203ENST00000435823 GNAI2P04899 355 aa14.29□□□□□ -0.12
COL28A1-203ENST00000435823 GMPSP49915 693 aaPredicted RBP14.29□□□□□ -0.12
COL28A1-203ENST00000435823 SCNN1DP51172 638 aa14.29□□□□□ -0.12
COL28A1-203ENST00000435823 FSTL1Q12841 308 aa14.29□□□□□ -0.12
COL28A1-203ENST00000435823 EAPPQ56P03 285 aaPredicted RBP14.29□□□□□ -0.12
COL28A1-203ENST00000435823 PNMA8AQ86V59 439 aaPredicted RBP14.29□□□□□ -0.12
COL28A1-203ENST00000435823 ITPRIPQ8IWB1 547 aa14.29□□□□□ -0.12
COL28A1-203ENST00000435823 WTIPA6NIX2 430 aaPredicted RBP14.28□□□□□ -0.12
COL28A1-203ENST00000435823 RPS12P25398 132 aaKnown RBP14.28□□□□□ -0.12
COL28A1-203ENST00000435823 METTL24Q5JXM2 366 aa14.28□□□□□ -0.12
COL28A1-203ENST00000435823 C15orf52Q6ZUT6 534 aaKnown RBP14.28□□□□□ -0.12
COL28A1-203ENST00000435823 KLHDC4Q8TBB5 520 aa14.28□□□□□ -0.12
COL28A1-203ENST00000435823 GPRC5DQ9NZD1 345 aa14.28□□□□□ -0.12
COL28A1-203ENST00000435823 RIPOR2Q9Y4F9 1068 aa14.28□□□□□ -0.12
COL28A1-203ENST00000435823 EYA2O00167 538 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 RLBP1P12271 317 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 KLRK1P26718 216 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 EPS15P42566 896 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 RFX5P48382 616 aaPredicted RBP14.27□□□□□ -0.13
COL28A1-203ENST00000435823 UBE4AQ14139 1066 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 LRRC24Q50LG9 513 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 CHADLQ6NUI6 762 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 ZNF804AQ7Z570 1209 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 TXNRD3Q86VQ6 643 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 LDHDQ86WU2 507 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.27□□□□□ -0.13
COL28A1-203ENST00000435823 ADARB2Q9NS39 739 aaKnown RBP14.27□□□□□ -0.13
COL28A1-203ENST00000435823 FBXO3Q9UK99 471 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 CLEC11AQ9Y240 323 aa14.27□□□□□ -0.13
COL28A1-203ENST00000435823 USP17L3A6NCW0 530 aa14.26□□□□□ -0.13
COL28A1-203ENST00000435823 USP17L4A6NCW7 530 aa14.26□□□□□ -0.13
COL28A1-203ENST00000435823 SNAP23O00161 211 aa14.26□□□□□ -0.13
COL28A1-203ENST00000435823 SRGAP3O43295 1099 aa14.26□□□□□ -0.13
COL28A1-203ENST00000435823 VIL1P09327 827 aaKnown RBP14.26□□□□□ -0.13
COL28A1-203ENST00000435823 PTPN12Q05209 780 aaKnown RBP14.26□□□□□ -0.13
COL28A1-203ENST00000435823 USP50Q70EL3 339 aaPredicted RBP14.26□□□□□ -0.13
COL28A1-203ENST00000435823 USP17L1Q7RTZ2 530 aa14.26□□□□□ -0.13
COL28A1-203ENST00000435823 PANK1Q8TE04 598 aa14.26□□□□□ -0.13
COL28A1-203ENST00000435823 DPF2Q92785 391 aa14.26□□□□□ -0.13
COL28A1-203ENST00000435823 KCNQ5Q9NR82 932 aa14.26□□□□□ -0.13
COL28A1-203ENST00000435823 SCN9AQ15858 1988 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 PSME4Q14997 1843 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 H7C1D1 291 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 CIAO1O76071 339 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 PDE8BO95263 885 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 MTX1Q13505 466 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 FBXW7Q969H0 707 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 SIL1Q9H173 461 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 CD209Q9NNX6 404 aa14.25□□□□□ -0.13
COL28A1-203ENST00000435823 CNOT7Q9UIV1 285 aaKnown RBP14.25□□□□□ -0.13
COL28A1-203ENST00000435823 IRS2Q9Y4H2 1338 aa14.24□□□□□ -0.13
COL28A1-203ENST00000435823 ZBTB7BO15156 539 aaPredicted RBP14.24□□□□□ -0.13
COL28A1-203ENST00000435823 POTEIP0CG38 1075 aa14.24□□□□□ -0.13
COL28A1-203ENST00000435823 POTEJP0CG39 1038 aa14.24□□□□□ -0.13
COL28A1-203ENST00000435823 HSPA6P17066 643 aa14.24□□□□□ -0.13
COL28A1-203ENST00000435823 STRIP1Q5VSL9 837 aa14.24□□□□□ -0.13
COL28A1-203ENST00000435823 RSBN1LQ6PCB5 846 aaPredicted RBP14.24□□□□□ -0.13
COL28A1-203ENST00000435823 MICALL2Q8IY33 904 aa14.24□□□□□ -0.13
COL28A1-203ENST00000435823 AGBL3Q8NEM8 1001 aa14.24□□□□□ -0.13
COL28A1-203ENST00000435823 COPRSQ9NQ92 184 aa14.24□□□□□ -0.13
COL28A1-203ENST00000435823 MYO3BQ8WXR4 1341 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 GABBR2O75899 941 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 IL15P40933 162 aaPredicted RBP14.23□□□□□ -0.13
COL28A1-203ENST00000435823 PUM3Q15397 648 aaKnown RBP14.23□□□□□ -0.13
COL28A1-203ENST00000435823 CAVIN4Q5BKX8 364 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 TTLL5Q6EMB2 1281 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 ATG9AQ7Z3C6 839 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 VPS37DQ86XT2 251 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 VGLL2Q8N8G2 317 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 CHMP4BQ9H444 224 aaKnown RBP14.23□□□□□ -0.13
COL28A1-203ENST00000435823 CEP126Q9P2H0 1117 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 ZNF609O15014 1411 aa14.23□□□□□ -0.13
COL28A1-203ENST00000435823 ADAMTSL1Q8N6G6 1762 aa14.22□□□□□ -0.13
COL28A1-203ENST00000435823 IFIT1P09914 478 aaKnown RBP14.22□□□□□ -0.13
COL28A1-203ENST00000435823 IL1R1P14778 569 aa14.22□□□□□ -0.13
COL28A1-203ENST00000435823 HIBADHP31937 336 aaKnown RBP14.22□□□□□ -0.13
COL28A1-203ENST00000435823 GTF2IP78347 998 aa14.22□□□□□ -0.13
COL28A1-203ENST00000435823 MVPQ14764 893 aaKnown RBP14.22□□□□□ -0.13
COL28A1-203ENST00000435823 DACT2Q5SW24 774 aa14.22□□□□□ -0.13
COL28A1-203ENST00000435823 DDX19BQ9UMR2 479 aa14.22□□□□□ -0.13
COL28A1-203ENST00000435823 PA2G4Q9UQ80 394 aaKnown RBP14.22□□□□□ -0.13
COL28A1-203ENST00000435823 USP17L8P0C7I0 530 aa14.21□□□□□ -0.13
COL28A1-203ENST00000435823 SLC5A1P13866 664 aa14.21□□□□□ -0.13
COL28A1-203ENST00000435823 GYG1P46976 350 aa14.21□□□□□ -0.13
COL28A1-203ENST00000435823 APLP1P51693 650 aa14.21□□□□□ -0.13
COL28A1-203ENST00000435823 PDE3AQ14432 1141 aa14.21□□□□□ -0.13
COL28A1-203ENST00000435823 C1orf115Q9H7X2 142 aa14.21□□□□□ -0.13
COL28A1-203ENST00000435823 COG6Q9Y2V7 657 aa14.21□□□□□ -0.13
COL28A1-203ENST00000435823 PNMA6EA0A0J9YXQ4 647 aa14.2□□□□□ -0.14
COL28A1-203ENST00000435823 SHTN1A0MZ66 631 aa14.2□□□□□ -0.14
COL28A1-203ENST00000435823 PRKAR2AP13861 404 aaKnown RBP14.2□□□□□ -0.14
COL28A1-203ENST00000435823 ATP8B2P98198 1209 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms