RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 WDR33Q9C0J8 1336 aaKnown RBP9.92□□□□□ -0.82
CD44-208ENST00000428726 GOLGA6L4A6NEF3 574 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 PRKAB2O43741 272 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 STARD3NLO95772 234 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 HSPD1P10809 573 aaKnown RBP9.92□□□□□ -0.82
CD44-208ENST00000428726 RPS6KB1P23443 525 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 EVX2Q03828 476 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 SLC9C2Q5TAH2 1124 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 TTC6Q86TZ1 520 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 BCAMP50895 628 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 SCRN1Q12765 414 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 BICD2Q8TD16 824 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 GPR101Q96P66 508 aaPredicted RBP9.92□□□□□ -0.82
CD44-208ENST00000428726 ZMYND15Q9H091 742 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 TTC12Q9H892 705 aaPredicted RBP9.92□□□□□ -0.82
CD44-208ENST00000428726 WWC3Q9ULE0 1092 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.92□□□□□ -0.82
CD44-208ENST00000428726 MAST3O60307 1309 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 PKD1L3Q7Z443 1732 aa9.92□□□□□ -0.82
CD44-208ENST00000428726 ATP5JP18859 108 aa9.91□□□□□ -0.82
CD44-208ENST00000428726 MCAMP43121 646 aa9.91□□□□□ -0.82
CD44-208ENST00000428726 CTDSPL2Q05D32 466 aa9.91□□□□□ -0.82
CD44-208ENST00000428726 DDB1Q16531 1140 aa9.91□□□□□ -0.82
CD44-208ENST00000428726 ATP2B3Q16720 1220 aa9.91□□□□□ -0.82
CD44-208ENST00000428726 SUSD4Q5VX71 490 aa9.91□□□□□ -0.82
CD44-208ENST00000428726 KBTBD3Q8NAB2 608 aa9.91□□□□□ -0.82
CD44-208ENST00000428726 NIP7Q9Y221 180 aaKnown RBP eCLIP9.91□□□□□ -0.82
CD44-208ENST00000428726 CCDC158Q5M9N0 1113 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 DNTTIP2Q5QJE6 756 aaKnown RBP9.9□□□□□ -0.82
CD44-208ENST00000428726 RNF20Q5VTR2 975 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 C3orf67Q6ZVT6 689 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 NLRP10Q86W26 655 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 HAUS7Q99871 368 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 SRP68Q9UHB9 627 aaKnown RBP9.9□□□□□ -0.82
CD44-208ENST00000428726 UBN2Q6ZU65 1347 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 HIP1O00291 1037 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 PRDM1O75626 825 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 FGAP02671 866 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 HSP90AA4PQ58FG1 418 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 TTLL11Q8NHH1 800 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 PHKBQ93100 1093 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 NGLY1Q96IV0 654 aa9.9□□□□□ -0.82
CD44-208ENST00000428726 SOS2Q07890 1332 aaPredicted RBP9.9□□□□□ -0.82
CD44-208ENST00000428726 CYP2D7A0A087X1C5 515 aa9.9□□□□□ -0.83
CD44-208ENST00000428726 E7EWF7 191 aa9.9□□□□□ -0.83
CD44-208ENST00000428726 ITPK1Q13572 414 aa9.9□□□□□ -0.83
CD44-208ENST00000428726 PIH1D3Q9NQM4 214 aaKnown RBP9.9□□□□□ -0.83
CD44-208ENST00000428726 DACT1Q9NYF0 836 aa9.9□□□□□ -0.83
CD44-208ENST00000428726 ERVV-2B6SEH9 535 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 MICU3Q86XE3 530 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 MARCH10Q8NA82 808 aaPredicted RBP9.89□□□□□ -0.83
CD44-208ENST00000428726 CCDC191Q8NCU4 936 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 B4E1Z4 1266 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 BIN1O00499 593 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 CYP19A1P11511 503 aaPredicted RBP9.89□□□□□ -0.83
CD44-208ENST00000428726 IL15P40933 162 aaPredicted RBP9.89□□□□□ -0.83
CD44-208ENST00000428726 GYG1P46976 350 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 RABL6Q3YEC7 729 aaPredicted RBP9.89□□□□□ -0.83
CD44-208ENST00000428726 LRSAM1Q6UWE0 723 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 LUZP1Q86V48 1076 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 SPATA32Q96LK8 384 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 MPHOSPH8Q99549 860 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 TSPY26PQ9H489 355 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 ARMT1Q9H993 441 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 TFCP2L1Q9NZI6 479 aa9.89□□□□□ -0.83
CD44-208ENST00000428726 BAZ2BQ9UIF8 2168 aaKnown RBP9.89□□□□□ -0.83
CD44-208ENST00000428726 MINDY4BA8MYZ0 360 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 ADD1P35611 737 aaKnown RBP9.88□□□□□ -0.83
CD44-208ENST00000428726 CRKLP46109 303 aaKnown RBP9.88□□□□□ -0.83
CD44-208ENST00000428726 SPECC1Q5M775 1068 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 PRDM10Q9NQV6 1147 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 PARP4Q9UKK3 1724 aaKnown RBP9.88□□□□□ -0.83
CD44-208ENST00000428726 COL5A2P05997 1499 aaPredicted RBP9.88□□□□□ -0.83
CD44-208ENST00000428726 GPAA1O43292 621 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 NR1I2O75469 434 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 PSMA5P28066 241 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 ZNF445P59923 1031 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 CHAF1AQ13111 956 aaPredicted RBP9.88□□□□□ -0.83
CD44-208ENST00000428726 AMIGO3Q86WK7 504 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 MAGEB6Q8N7X4 407 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 SDR42E1Q8WUS8 393 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 RNF113AO15541 343 aaKnown RBP9.88□□□□□ -0.83
CD44-208ENST00000428726 AP5Z1O43299 807 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 KLRK1P26718 216 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 ZSCAN30Q86W11 494 aa9.88□□□□□ -0.83
CD44-208ENST00000428726 KLF18A0A0U1RQI7 1052 aa9.87□□□□□ -0.83
CD44-208ENST00000428726 ANKRD18BA2A2Z9 1011 aa9.87□□□□□ -0.83
CD44-208ENST00000428726 PTPDC1A2A3K4 754 aa9.87□□□□□ -0.83
CD44-208ENST00000428726 MARCKSP29966 332 aaPredicted RBP9.87□□□□□ -0.83
CD44-208ENST00000428726 CCDC173Q0VFZ6 552 aa9.87□□□□□ -0.83
CD44-208ENST00000428726 GIGYF2Q6Y7W6 1299 aaKnown RBP9.87□□□□□ -0.83
CD44-208ENST00000428726 TM6SF1Q9BZW5 370 aa9.87□□□□□ -0.83
CD44-208ENST00000428726 LAMB4A4D0S4 1761 aa9.87□□□□□ -0.83
CD44-208ENST00000428726 CCDC102BQ68D86 513 aa9.87□□□□□ -0.83
CD44-208ENST00000428726 KCNB2Q92953 911 aa9.87□□□□□ -0.83
CD44-208ENST00000428726 ZNF532Q9HCE3 1301 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 GOLGA8BA8MQT2 603 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 CTDNEP1O95476 244 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 MBD3O95983 291 aa9.86□□□□□ -0.83
CD44-208ENST00000428726 NFXL1Q6ZNB6 911 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms