RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 FSD2A1L4K1 749 aa16.54■□□□□ 0.24
PTPRU-204ENST00000428026 RHOXF2BP0C7M4 288 aa16.54■□□□□ 0.24
PTPRU-204ENST00000428026 UBA7P41226 1012 aa16.54■□□□□ 0.24
PTPRU-204ENST00000428026 RHOXF2Q9BQY4 288 aa16.54■□□□□ 0.24
PTPRU-204ENST00000428026 STAMBPO95630 424 aa16.54■□□□□ 0.24
PTPRU-204ENST00000428026 TTC31Q49AM3 519 aaPredicted RBP16.54■□□□□ 0.24
PTPRU-204ENST00000428026 PAIP2Q9BPZ3 127 aaKnown RBP16.54■□□□□ 0.24
PTPRU-204ENST00000428026 TCP11L1Q9NUJ3 509 aa16.54■□□□□ 0.24
PTPRU-204ENST00000428026 KLF18A0A0U1RQI7 1052 aa16.54■□□□□ 0.24
PTPRU-204ENST00000428026 SLC4A8Q2Y0W8 1093 aa16.54■□□□□ 0.24
PTPRU-204ENST00000428026 ABCA8O94911 1581 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 FAM98CQ17RN3 349 aaKnown RBP16.53■□□□□ 0.24
PTPRU-204ENST00000428026 XAGE3Q8WTP9 111 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 MMRN2Q9H8L6 949 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 LZTFL1Q9NQ48 299 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 PDE1AP54750 535 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 KANK3Q6NY19 840 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 COPS6Q7L5N1 327 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 MSL1Q68DK7 614 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 CALML4Q96GE6 196 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 IRX3P78415 501 aaPredicted RBP16.53■□□□□ 0.24
PTPRU-204ENST00000428026 LDHAL6AQ6ZMR3 332 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 SIRT1Q96EB6 747 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 PUS7Q96PZ0 661 aaKnown RBP16.53■□□□□ 0.24
PTPRU-204ENST00000428026 VAT1LQ9HCJ6 419 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 OGFRQ9NZT2 677 aa16.53■□□□□ 0.24
PTPRU-204ENST00000428026 PRC1O43663 620 aa16.52■□□□□ 0.24
PTPRU-204ENST00000428026 ZEB2O60315 1214 aa16.52■□□□□ 0.24
PTPRU-204ENST00000428026 FAM114A1Q8IWE2 563 aa16.52■□□□□ 0.24
PTPRU-204ENST00000428026 ZNF444Q8N0Y2 327 aaPredicted RBP16.52■□□□□ 0.24
PTPRU-204ENST00000428026 SETDB2Q96T68 719 aa16.52■□□□□ 0.24
PTPRU-204ENST00000428026 CTAGE9A4FU28 777 aa16.52■□□□□ 0.24
PTPRU-204ENST00000428026 KIAA0753Q2KHM9 967 aa16.52■□□□□ 0.24
PTPRU-204ENST00000428026 RHPN1Q8TCX5 695 aa16.52■□□□□ 0.24
PTPRU-204ENST00000428026 RBM8AQ9Y5S9 174 aaKnown RBP16.52■□□□□ 0.24
PTPRU-204ENST00000428026 ADGRL2O95490 1459 aa16.52■□□□□ 0.24
PTPRU-204ENST00000428026 RNF41Q9H4P4 317 aaPredicted RBP16.52■□□□□ 0.23
PTPRU-204ENST00000428026 HMG20BQ9P0W2 317 aa16.52■□□□□ 0.23
PTPRU-204ENST00000428026 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.52■□□□□ 0.23
PTPRU-204ENST00000428026 ASXL1Q8IXJ9 1541 aa16.52■□□□□ 0.23
PTPRU-204ENST00000428026 ST5P78524 1137 aa16.52■□□□□ 0.23
PTPRU-204ENST00000428026 CCDC6Q16204 474 aa16.52■□□□□ 0.23
PTPRU-204ENST00000428026 HS1BP3Q53T59 392 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 NCOA7Q8NI08 942 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 HOMER2Q9NSB8 354 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 ERCC6L2Q5T890 1561 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 KIF20AO95235 890 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 RBSNQ9H1K0 784 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 A0A1W2PRG0 241 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 EBAG9O00559 213 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 CYLC1P35663 651 aaPredicted RBP16.51■□□□□ 0.23
PTPRU-204ENST00000428026 AMPD3Q01432 767 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 SMC5Q8IY18 1101 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 SLC5A1P13866 664 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 DZIP1Q86YF9 867 aaKnown RBP16.51■□□□□ 0.23
PTPRU-204ENST00000428026 C17orf53Q8N3J3 647 aaPredicted RBP16.51■□□□□ 0.23
PTPRU-204ENST00000428026 CDC5LQ99459 802 aaKnown RBP16.51■□□□□ 0.23
PTPRU-204ENST00000428026 ZNF287Q9HBT7 754 aa16.51■□□□□ 0.23
PTPRU-204ENST00000428026 CCDC155Q8N6L0 562 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 SCLT1Q96NL6 688 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 IFNKQ9P0W0 207 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 USP21Q9UK80 565 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 Q6ZUG5 572 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 OTUD6BQ8N6M0 293 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 KCNG4Q8TDN1 519 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 ALG1Q9BT22 464 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 OPA1O60313 960 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 C6orf163Q5TEZ5 329 aa16.5■□□□□ 0.23
PTPRU-204ENST00000428026 CCDC121Q6ZUS5 278 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 CRACR2BQ8N4Y2 399 aaPredicted RBP16.49■□□□□ 0.23
PTPRU-204ENST00000428026 EXOC1Q9NV70 894 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 GUCA1BQ9UMX6 200 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 NIP7Q9Y221 180 aaKnown RBP eCLIP16.49■□□□□ 0.23
PTPRU-204ENST00000428026 ZNF569Q5MCW4 686 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 NBPF11Q86T75 865 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 SMAP1Q8IYB5 467 aaPredicted RBP16.49■□□□□ 0.23
PTPRU-204ENST00000428026 DCAF5Q96JK2 942 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 RTL1A6NKG5 1358 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 RTCBQ9Y3I0 505 aaKnown RBP16.49■□□□□ 0.23
PTPRU-204ENST00000428026 TNIP1Q15025 636 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 NBPF14Q5TI25 921 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 KRBA2Q6ZNG9 492 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 PIK3R4Q99570 1358 aa16.49■□□□□ 0.23
PTPRU-204ENST00000428026 CTAGE1Q96RT6 745 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 SELENOSQ9BQE4 189 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 STX17P56962 302 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 PHACTR3Q96KR7 559 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 EIF2AK4Q9P2K8 1649 aaKnown RBP16.48■□□□□ 0.23
PTPRU-204ENST00000428026 PCDH11XQ9BZA7 1347 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 PCDH11YQ9BZA8 1340 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 MFSD6Q6ZSS7 791 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 MYO5CQ9NQX4 1742 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 SMIM23A6NLE4 172 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 TERF1P54274 439 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 RASSF4Q9H2L5 321 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 CFAP74Q9C0B2 1584 aa16.48■□□□□ 0.23
PTPRU-204ENST00000428026 TMEM94Q12767 1356 aa16.47■□□□□ 0.23
PTPRU-204ENST00000428026 AK2P54819 239 aa16.47■□□□□ 0.23
PTPRU-204ENST00000428026 SPAG5Q96R06 1193 aa16.47■□□□□ 0.23
PTPRU-204ENST00000428026 UTP14AQ9BVJ6 771 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms