RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 TICAM2Q86XR7 235 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 PRIMPOLQ96LW4 560 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 ISCA1Q9BUE6 129 aa16.85■□□□□ 0.29
LIG1-202ENST00000427526 CKAP2LQ8IYA6 745 aa16.84■□□□□ 0.29
LIG1-202ENST00000427526 LLPHQ9BRT6 129 aaKnown RBP16.84■□□□□ 0.29
LIG1-202ENST00000427526 ZSCAN16Q9H4T2 348 aaPredicted RBP16.84■□□□□ 0.29
LIG1-202ENST00000427526 GPR108Q9NPR9 543 aa16.84■□□□□ 0.29
LIG1-202ENST00000427526 PFKFB2O60825 505 aa16.84■□□□□ 0.29
LIG1-202ENST00000427526 NR1I2O75469 434 aa16.84■□□□□ 0.29
LIG1-202ENST00000427526 HMGB1P09429 215 aaKnown RBP16.84■□□□□ 0.29
LIG1-202ENST00000427526 DNTTIP2Q5QJE6 756 aaKnown RBP16.84■□□□□ 0.29
LIG1-202ENST00000427526 LUZP1Q86V48 1076 aa16.84■□□□□ 0.29
LIG1-202ENST00000427526 HELLSQ9NRZ9 838 aa16.84■□□□□ 0.29
LIG1-202ENST00000427526 CYP19A1P11511 503 aaPredicted RBP16.83■□□□□ 0.29
LIG1-202ENST00000427526 DDB1Q16531 1140 aa16.83■□□□□ 0.29
LIG1-202ENST00000427526 ZNF594Q96JF6 807 aaPredicted RBP16.83■□□□□ 0.29
LIG1-202ENST00000427526 AGXT2Q9BYV1 514 aa16.83■□□□□ 0.29
LIG1-202ENST00000427526 HLFQ16534 295 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 KIF6Q6ZMV9 814 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 DHX32Q7L7V1 743 aaKnown RBP16.83■□□□□ 0.28
LIG1-202ENST00000427526 DDX11Q96FC9 970 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 ACSBG1Q96GR2 724 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 DSCC1Q9BVC3 393 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 CBX8Q9HC52 389 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 CCDC9Q9Y3X0 531 aaKnown RBP16.83■□□□□ 0.28
LIG1-202ENST00000427526 ADD1P35611 737 aaKnown RBP16.83■□□□□ 0.28
LIG1-202ENST00000427526 EXOSC10Q01780 885 aaKnown RBP16.83■□□□□ 0.28
LIG1-202ENST00000427526 ANO6Q4KMQ2 910 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 LRRC2Q9BYS8 371 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 PAG1Q9NWQ8 432 aa16.83■□□□□ 0.28
LIG1-202ENST00000427526 LAMA4Q16363 1823 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 HSP90B1P14625 803 aaKnown RBP16.82■□□□□ 0.28
LIG1-202ENST00000427526 SLFNL1Q499Z3 407 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 FAM89AQ96GI7 184 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 ZBTB1Q9Y2K1 713 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 NUP188Q5SRE5 1749 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 TOM1O60784 492 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 GTF2F1P35269 517 aaKnown RBP eCLIP16.82■□□□□ 0.282e-10■■■■■ 37.3
LIG1-202ENST00000427526 TIMM10P62072 90 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 HMGN5P82970 282 aaKnown RBP16.82■□□□□ 0.28
LIG1-202ENST00000427526 NSUN7Q8NE18 718 aaKnown RBP16.82■□□□□ 0.28
LIG1-202ENST00000427526 PYCARDQ9ULZ3 195 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 ITGB4P16144 1822 aa16.82■□□□□ 0.28
LIG1-202ENST00000427526 PHLPP1O60346 1717 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 GOLIM4O00461 696 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 CTDNEP1O95476 244 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 ZMYM1Q5SVZ6 1142 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 SYNE4Q8N205 404 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 SPC24Q8NBT2 197 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 CFAP45Q9UL16 551 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 GOLGA6L6A8MZA4 724 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 H3BQV1 296 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 GPTP24298 496 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 IFFO2Q5TF58 517 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 MARCH10Q8NA82 808 aaPredicted RBP16.81■□□□□ 0.28
LIG1-202ENST00000427526 NEUROD6Q96NK8 337 aa16.81■□□□□ 0.28
LIG1-202ENST00000427526 CCDC85AQ96PX6 553 aaPredicted RBP16.81■□□□□ 0.28
LIG1-202ENST00000427526 IL15P40933 162 aaPredicted RBP16.8■□□□□ 0.28
LIG1-202ENST00000427526 LRRC24Q50LG9 513 aa16.8■□□□□ 0.28
LIG1-202ENST00000427526 NAA16Q6N069 864 aaPredicted RBP16.8■□□□□ 0.28
LIG1-202ENST00000427526 MAP3K15Q6ZN16 1313 aa16.8■□□□□ 0.28
LIG1-202ENST00000427526 TJP1Q07157 1748 aa16.8■□□□□ 0.28
LIG1-202ENST00000427526 MTERF4Q7Z6M4 381 aaKnown RBP16.8■□□□□ 0.28
LIG1-202ENST00000427526 TDRD7Q8NHU6 1098 aaKnown RBP16.8■□□□□ 0.28
LIG1-202ENST00000427526 BICD2Q8TD16 824 aa16.8■□□□□ 0.28
LIG1-202ENST00000427526 CDCA7Q9BWT1 371 aaPredicted RBP16.8■□□□□ 0.28
LIG1-202ENST00000427526 THRAP3Q9Y2W1 955 aaKnown RBP16.8■□□□□ 0.28
LIG1-202ENST00000427526 HSPD1P10809 573 aaKnown RBP16.79■□□□□ 0.28
LIG1-202ENST00000427526 TRIM28Q13263 835 aaKnown RBP16.79■□□□□ 0.28
LIG1-202ENST00000427526 GIGYF2Q6Y7W6 1299 aaKnown RBP16.79■□□□□ 0.28
LIG1-202ENST00000427526 PUS3Q9BZE2 481 aaKnown RBP16.79■□□□□ 0.28
LIG1-202ENST00000427526 SPATA31A5Q5VU36 1347 aa16.79■□□□□ 0.28
LIG1-202ENST00000427526 SPATA31A7Q8IWB4 1347 aa16.79■□□□□ 0.28
LIG1-202ENST00000427526 PLA2G4DQ86XP0 818 aa16.79■□□□□ 0.28
LIG1-202ENST00000427526 RCOR1Q9UKL0 485 aa16.79■□□□□ 0.28
LIG1-202ENST00000427526 TBC1D2BQ9UPU7 963 aa16.79■□□□□ 0.28
LIG1-202ENST00000427526 SALL1Q9NSC2 1324 aa16.79■□□□□ 0.28
LIG1-202ENST00000427526 A0A0G2JLW4 131 aa16.78■□□□□ 0.28
LIG1-202ENST00000427526 EYA2O00167 538 aa16.78■□□□□ 0.28
LIG1-202ENST00000427526 APOBRQ0VD83 1088 aa16.78■□□□□ 0.28
LIG1-202ENST00000427526 PLCH1Q4KWH8 1693 aa16.78■□□□□ 0.28
LIG1-202ENST00000427526 E7EWF7 191 aa16.78■□□□□ 0.28
LIG1-202ENST00000427526 CIAO1O76071 339 aa16.78■□□□□ 0.28
LIG1-202ENST00000427526 AEBP2Q6ZN18 517 aaPredicted RBP16.78■□□□□ 0.28
LIG1-202ENST00000427526 MAST3O60307 1309 aa16.77■□□□□ 0.28
LIG1-202ENST00000427526 PTPDC1A2A3K4 754 aa16.77■□□□□ 0.28
LIG1-202ENST00000427526 PTGS1P23219 599 aa16.77■□□□□ 0.28
LIG1-202ENST00000427526 ZNF165P49910 485 aa16.77■□□□□ 0.28
LIG1-202ENST00000427526 MYH15Q9Y2K3 1946 aa16.77■□□□□ 0.28
LIG1-202ENST00000427526 RNF113AO15541 343 aaKnown RBP16.77■□□□□ 0.27
LIG1-202ENST00000427526 CAVIN2O95810 425 aa16.77■□□□□ 0.27
LIG1-202ENST00000427526 PCCAP05165 728 aaPredicted RBP16.77■□□□□ 0.27
LIG1-202ENST00000427526 ZBTB38Q8NAP3 1195 aaPredicted RBP16.77■□□□□ 0.27
LIG1-202ENST00000427526 A0A1B0GUL7 405 aa16.76■□□□□ 0.27
LIG1-202ENST00000427526 UBAP1LF5GYI3 381 aa16.76■□□□□ 0.27
LIG1-202ENST00000427526 ZNF75DP51815 510 aa16.76■□□□□ 0.27
LIG1-202ENST00000427526 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.76■□□□□ 0.27
LIG1-202ENST00000427526 NLRP10Q86W26 655 aa16.76■□□□□ 0.27
LIG1-202ENST00000427526 FBXL16Q8N461 479 aa16.76■□□□□ 0.27
LIG1-202ENST00000427526 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms