RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 MCMDC2Q4G0Z9 681 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 KDRP35968 1356 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 NPHP3Q7Z494 1330 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 ZSCAN20P17040 1043 aaPredicted RBP10.11□□□□□ -0.79
USP40-203ENST00000427112 PAG1Q9NWQ8 432 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 NRKQ7Z2Y5 1582 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 BAZ2BQ9UIF8 2168 aaKnown RBP10.11□□□□□ -0.79
USP40-203ENST00000427112 RESTQ13127 1097 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 ERCC6LQ2NKX8 1250 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 PRIMPOLQ96LW4 560 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 HINFPQ9BQA5 517 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 USP31Q70CQ4 1352 aa10.11□□□□□ -0.79
USP40-203ENST00000427112 E7EWF7 191 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 NFXL1Q6ZNB6 911 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 GRAMD1CQ8IYS0 662 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 NSUN7Q8NE18 718 aaKnown RBP10.1□□□□□ -0.79
USP40-203ENST00000427112 MAP7D2Q96T17 732 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 ORC3Q9UBD5 711 aaPredicted RBP10.1□□□□□ -0.79
USP40-203ENST00000427112 HTATSF1O43719 755 aaKnown RBP10.1□□□□□ -0.79
USP40-203ENST00000427112 KLHL10Q6JEL2 608 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 TRMT44Q8IYL2 757 aaKnown RBP10.1□□□□□ -0.79
USP40-203ENST00000427112 TMEM87AQ8NBN3 555 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 STAMQ92783 540 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 XPO4Q9C0E2 1151 aaKnown RBP10.1□□□□□ -0.79
USP40-203ENST00000427112 PCDHA7Q9UN72 937 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 ZNF609O15014 1411 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 A0A1B0GUL7 405 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 FOXN1O15353 648 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 OSBP2Q969R2 916 aa10.1□□□□□ -0.79
USP40-203ENST00000427112 ALDH1L1O75891 902 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 TATP17735 454 aaPredicted RBP10.09□□□□□ -0.79
USP40-203ENST00000427112 CASP1P29466 404 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 C8orf76Q96K31 380 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 DDX19AQ9NUU7 478 aaKnown RBP10.09□□□□□ -0.79
USP40-203ENST00000427112 SSH2Q76I76 1423 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 HSPD1P10809 573 aaKnown RBP10.09□□□□□ -0.79
USP40-203ENST00000427112 PPARDQ03181 441 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 TTC39AQ5SRH9 613 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 SYNE3Q6ZMZ3 975 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 EEF2KMTQ96G04 330 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 RNF216Q9NWF9 866 aaPredicted RBP10.09□□□□□ -0.79
USP40-203ENST00000427112 RICTORQ6R327 1708 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 ZAP70P43403 619 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 ANKRD1Q15327 319 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 LRRC8AQ8IWT6 810 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 DNAI1Q9UI46 699 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 ADAMTSL3P82987 1691 aa10.09□□□□□ -0.79
USP40-203ENST00000427112 SMIM22K7EJ46 135 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 SERPINC1P01008 464 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 GYS2P54840 703 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 PNOCQ13519 176 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 CFAP100Q494V2 611 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 METTL22Q9BUU2 404 aaPredicted RBP10.08□□□□□ -0.8
USP40-203ENST00000427112 JAG2Q9Y219 1238 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 TBX22Q9Y458 520 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 AOX1Q06278 1338 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 KIF28PB7ZC32 967 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 RALYLQ86SE5 291 aaKnown RBP10.08□□□□□ -0.8
USP40-203ENST00000427112 NUP133Q8WUM0 1156 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 PUS7LQ9H0K6 701 aaKnown RBP10.08□□□□□ -0.8
USP40-203ENST00000427112 CYP27B1O15528 508 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 PRC1O43663 620 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 URI1O94763 535 aaPredicted RBP10.08□□□□□ -0.8
USP40-203ENST00000427112 SEC31AO94979 1220 aaKnown RBP10.08□□□□□ -0.8
USP40-203ENST00000427112 TFRCP02786 760 aaKnown RBP10.08□□□□□ -0.8
USP40-203ENST00000427112 PDIA3P30101 505 aaKnown RBP10.08□□□□□ -0.8
USP40-203ENST00000427112 STX17P56962 302 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 LONRF3Q496Y0 759 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 TOM1L2Q6ZVM7 507 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 DHX32Q7L7V1 743 aaKnown RBP10.08□□□□□ -0.8
USP40-203ENST00000427112 DPF2Q92785 391 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 CFAP45Q9UL16 551 aa10.08□□□□□ -0.8
USP40-203ENST00000427112 B4E1Z4 1266 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 TMEM232C9JQI7 657 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 KARSQ15046 597 aaKnown RBP10.07□□□□□ -0.8
USP40-203ENST00000427112 SMIM5Q71RC9 77 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 CCDC34Q96HJ3 373 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 DESI2Q9BSY9 194 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 SPTLC3Q9NUV7 552 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 CEP57L1Q8IYX8 460 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 TM6SF1Q9BZW5 370 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 SLC52A2Q9HAB3 445 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 KCNJ14Q9UNX9 436 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 MAST3O60307 1309 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 HIP1O00291 1037 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 ITSN1Q15811 1721 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 STX1AQ16623 288 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 ILDR1Q86SU0 546 aaPredicted RBP10.07□□□□□ -0.8
USP40-203ENST00000427112 ARHGEF25Q86VW2 580 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 UTP14AQ9BVJ6 771 aaKnown RBP10.07□□□□□ -0.8
USP40-203ENST00000427112 CEP126Q9P2H0 1117 aa10.07□□□□□ -0.8
USP40-203ENST00000427112 FAM170AA1A519 330 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 NBPF26B4DH59 902 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 CTDSPL2Q05D32 466 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 NBPF14Q5TI25 921 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 NBPF10Q6P3W6 841 aaKnown RBP10.06□□□□□ -0.8
USP40-203ENST00000427112 NBPF15Q8N660 670 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 ZCCHC17Q9NP64 241 aaKnown RBP10.06□□□□□ -0.8
USP40-203ENST00000427112 U3KPZ7 1027 aaPredicted RBP10.06□□□□□ -0.8
USP40-203ENST00000427112 NPHP4O75161 1426 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms