RNA–Protein interactions for RNA: ENST00000424270.6

SDCBP-203, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SDCBP, Length 1,277 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-203ENST00000424270 RNF208Q9H0X6 261 aa8.42□□□□□ -1.06
SDCBP-203ENST00000424270 POLLQ9UGP5 575 aa8.42□□□□□ -1.06
SDCBP-203ENST00000424270 RAPGEFL1Q9UHV5 662 aa8.42□□□□□ -1.06
SDCBP-203ENST00000424270 TRMT112Q9UI30 125 aaKnown RBP8.42□□□□□ -1.06
SDCBP-203ENST00000424270 KNSTRNQ9Y448 316 aa8.42□□□□□ -1.06
SDCBP-203ENST00000424270 SASH1O94885 1247 aa8.41□□□□□ -1.06
SDCBP-203ENST00000424270 MTFR1Q15390 333 aa8.41□□□□□ -1.06
SDCBP-203ENST00000424270 GIGYF2Q6Y7W6 1299 aaKnown RBP8.41□□□□□ -1.06
SDCBP-203ENST00000424270 MCM10Q7L590 875 aa8.41□□□□□ -1.06
SDCBP-203ENST00000424270 TBC1D16Q8TBP0 767 aa8.41□□□□□ -1.06
SDCBP-203ENST00000424270 NECTIN2Q92692 538 aa8.41□□□□□ -1.06
SDCBP-203ENST00000424270 ZNF428Q96B54 188 aa8.41□□□□□ -1.06
SDCBP-203ENST00000424270 SHISA4Q96DD7 197 aa8.41□□□□□ -1.06
SDCBP-203ENST00000424270 CLMNQ96JQ2 1002 aa8.41□□□□□ -1.06
SDCBP-203ENST00000424270 ERBB4Q15303 1308 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 USP17L3A6NCW0 530 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 USP17L4A6NCW7 530 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 TFRCP02786 760 aaKnown RBP8.4□□□□□ -1.06
SDCBP-203ENST00000424270 CCL5P13501 91 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 IREB2P48200 963 aaKnown RBP8.4□□□□□ -1.06
SDCBP-203ENST00000424270 BCAMP50895 628 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 UBXN2AP68543 259 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 SLC10A5Q5PT55 438 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 LDLRAD1Q5T700 205 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 USP17L1Q7RTZ2 530 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 C7orf61Q8IZ16 206 aa8.4□□□□□ -1.06
SDCBP-203ENST00000424270 ZMYND8Q9ULU4 1186 aaPredicted RBP8.4□□□□□ -1.06
SDCBP-203ENST00000424270 DDX60Q8IY21 1712 aaKnown RBP8.4□□□□□ -1.07
SDCBP-203ENST00000424270 DUOX1Q9NRD9 1551 aa8.39□□□□□ -1.07
SDCBP-203ENST00000424270 SH3TC1Q8TE82 1336 aa8.39□□□□□ -1.07
SDCBP-203ENST00000424270 GJA8P48165 433 aa8.39□□□□□ -1.07
SDCBP-203ENST00000424270 CAP1Q01518 475 aa8.39□□□□□ -1.07
SDCBP-203ENST00000424270 CNGB1Q14028 1251 aaPredicted RBP8.39□□□□□ -1.07
SDCBP-203ENST00000424270 CELF1Q92879 486 aaKnown RBP8.39□□□□□ -1.07
SDCBP-203ENST00000424270 TRIM47Q96LD4 638 aa8.39□□□□□ -1.07
SDCBP-203ENST00000424270 UBE2OQ9C0C9 1292 aaKnown RBP8.39□□□□□ -1.07
SDCBP-203ENST00000424270 MIS18AQ9NYP9 233 aa8.39□□□□□ -1.07
SDCBP-203ENST00000424270 GGA1Q9UJY5 639 aa8.39□□□□□ -1.07
SDCBP-203ENST00000424270 SIPA1L3O60292 1781 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-203ENST00000424270 CEMIPQ8WUJ3 1361 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 HTTP42858 3142 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 CCL15-CCL14A0A0B4J2E2 113 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 WNT10BO00744 389 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 FMNL1O95466 1100 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-203ENST00000424270 GNRH1P01148 92 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 GJB1P08034 283 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 HOXD10P28358 340 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 GRK4P32298 578 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 PRMT2P55345 433 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 MKRN4PQ13434 485 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-203ENST00000424270 CCL15Q16663 113 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 HSP90AB3PQ58FF7 597 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 TDHQ8IZJ6 230 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 U2AF1L4Q8WU68 220 aaKnown RBP8.38□□□□□ -1.07
SDCBP-203ENST00000424270 ARHGAP39Q9C0H5 1083 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 ELP3Q9H9T3 547 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 NUP98P52948 1817 aa8.38□□□□□ -1.07
SDCBP-203ENST00000424270 SYN1P17600 705 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 PRKAR2BP31323 418 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 LACTBP83111 547 aaPredicted RBP8.37□□□□□ -1.07
SDCBP-203ENST00000424270 AIMP1Q12904 312 aaKnown RBP8.37□□□□□ -1.07
SDCBP-203ENST00000424270 DCTN1Q14203 1278 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 LRIT3Q3SXY7 679 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 SUPT20HL1Q3ZLR7 823 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 OPTNQ96CV9 577 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 PTPN18Q99952 460 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 DEFB129Q9H1M3 183 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 RIPOR2Q9Y4F9 1068 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 CENPFP49454 3210 aa8.37□□□□□ -1.07
SDCBP-203ENST00000424270 TNFRSF10AO00220 468 aa8.36□□□□□ -1.07
SDCBP-203ENST00000424270 MYO1BO43795 1136 aa8.36□□□□□ -1.07
SDCBP-203ENST00000424270 BMP8BP34820 402 aa8.36□□□□□ -1.07
SDCBP-203ENST00000424270 TAF7Q15545 349 aaPredicted RBP8.36□□□□□ -1.07
SDCBP-203ENST00000424270 RTL5Q5HYW3 569 aaPredicted RBP8.36□□□□□ -1.07
SDCBP-203ENST00000424270 ZNF697Q5TEC3 545 aa8.36□□□□□ -1.07
SDCBP-203ENST00000424270 ANKRD13AQ8IZ07 590 aa8.36□□□□□ -1.07
SDCBP-203ENST00000424270 MAFAQ8NHW3 353 aaPredicted RBP8.36□□□□□ -1.07
SDCBP-203ENST00000424270 THUMPD2Q9BTF0 503 aaKnown RBP8.36□□□□□ -1.07
SDCBP-203ENST00000424270 MXD3Q9BW11 206 aa8.36□□□□□ -1.07
SDCBP-203ENST00000424270 VEZTQ9HBM0 779 aa8.36□□□□□ -1.07
SDCBP-203ENST00000424270 MYPNQ86TC9 1320 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 MYO3BQ8WXR4 1341 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 EIF2S2P20042 333 aaKnown RBP8.35□□□□□ -1.07
SDCBP-203ENST00000424270 PSMC4P43686 418 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 GTF2A2P52657 109 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 RPS8P62241 208 aaKnown RBP8.35□□□□□ -1.07
SDCBP-203ENST00000424270 PODNQ7Z5L7 613 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 NLRP10Q86W26 655 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 KIAA0825Q8IV33 1275 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 GMLQ99445 158 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 GDF15Q99988 308 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 TAOK2Q9UL54 1235 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 BRCA2P51587 3418 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 KDM3BQ7LBC6 1761 aa8.35□□□□□ -1.07
SDCBP-203ENST00000424270 RANBP2P49792 3224 aaKnown RBP8.35□□□□□ -1.07
SDCBP-203ENST00000424270 UNCXA6NJT0 531 aa8.34□□□□□ -1.07
SDCBP-203ENST00000424270 SGPL1O95470 568 aa8.34□□□□□ -1.07
SDCBP-203ENST00000424270 GJA5P36382 358 aa8.34□□□□□ -1.07
SDCBP-203ENST00000424270 MAGEA10P43363 369 aaPredicted RBP8.34□□□□□ -1.07
SDCBP-203ENST00000424270 EIF4G2P78344 907 aaKnown RBP eCLIP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms