RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 FMR1NBQ8N0W7 255 aaPredicted RBP24.81■■□□□ 1.56
USP48-205ENST00000421625 IFNKQ9P0W0 207 aa24.81■■□□□ 1.56
USP48-205ENST00000421625 NAP1L2Q9ULW6 460 aaPredicted RBP24.81■■□□□ 1.56
USP48-205ENST00000421625 PCDHA7Q9UN72 937 aa24.81■■□□□ 1.56
USP48-205ENST00000421625 CCDC66A2RUB6 948 aa24.8■■□□□ 1.56
USP48-205ENST00000421625 SDF4Q9BRK5 362 aa24.8■■□□□ 1.56
USP48-205ENST00000421625 ORAI2Q96SN7 254 aa24.8■■□□□ 1.56
USP48-205ENST00000421625 IMPACTQ9P2X3 320 aa24.8■■□□□ 1.56
USP48-205ENST00000421625 NCAPD2Q15021 1401 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 LMO7Q8WWI1 1683 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 MRC1P22897 1456 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 PXDNQ92626 1479 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 RGPD2P0DJD1 1756 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 GTF2E1P29083 439 aaPredicted RBP24.79■■□□□ 1.56
USP48-205ENST00000421625 CLCN6P51797 869 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 MCMDC2Q4G0Z9 681 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 CCDC93Q567U6 631 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 DDX46Q7L014 1031 aaKnown RBP24.79■■□□□ 1.56
USP48-205ENST00000421625 MRPS27Q92552 414 aaKnown RBP24.79■■□□□ 1.56
USP48-205ENST00000421625 FHOD1Q9Y613 1164 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 ANKARQ7Z5J8 1434 aa24.79■■□□□ 1.56
USP48-205ENST00000421625 TFCP2Q12800 502 aa24.78■■□□□ 1.56
USP48-205ENST00000421625 LAMA4Q16363 1823 aa24.78■■□□□ 1.56
USP48-205ENST00000421625 A0A0G2JLW4 131 aa24.78■■□□□ 1.56
USP48-205ENST00000421625 NDUFA8P51970 172 aa24.78■■□□□ 1.56
USP48-205ENST00000421625 PSME1Q06323 249 aa24.78■■□□□ 1.56
USP48-205ENST00000421625 TNNI3KQ59H18 835 aa24.78■■□□□ 1.56
USP48-205ENST00000421625 DHX32Q7L7V1 743 aaKnown RBP24.78■■□□□ 1.56
USP48-205ENST00000421625 FPGT-TNNI3KV9GXZ4 949 aa24.78■■□□□ 1.56
USP48-205ENST00000421625 BMS1Q14692 1282 aaKnown RBP24.77■■□□□ 1.56
USP48-205ENST00000421625 RIC3Q7Z5B4 369 aa24.77■■□□□ 1.56
USP48-205ENST00000421625 CCDC9Q9Y3X0 531 aaKnown RBP24.77■■□□□ 1.56
USP48-205ENST00000421625 ZNF142P52746 1687 aaPredicted RBP24.77■■□□□ 1.56
USP48-205ENST00000421625 DDX58O95786 925 aaKnown RBP24.77■■□□□ 1.56
USP48-205ENST00000421625 FMNL2Q96PY5 1086 aa24.77■■□□□ 1.56
USP48-205ENST00000421625 HEG1Q9ULI3 1381 aa24.77■■□□□ 1.56
USP48-205ENST00000421625 SFPQP23246 707 aaKnown RBP eCLIP24.76■■□□□ 1.55
USP48-205ENST00000421625 GORABQ5T7V8 394 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 CCDC150Q8NCX0 1101 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 NOL10Q9BSC4 688 aaKnown RBP24.76■■□□□ 1.55
USP48-205ENST00000421625 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.76■■□□□ 1.554e-19■□□□□ 9.7
USP48-205ENST00000421625 BIN1O00499 593 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 PLEKHO1Q53GL0 409 aaPredicted RBP24.76■■□□□ 1.55
USP48-205ENST00000421625 LMOD2Q6P5Q4 547 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 DBNDD2Q9BQY9 259 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 SALL1Q9NSC2 1324 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 PDIA6Q15084 440 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 ARHGAP29Q52LW3 1261 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 CHST3Q7LGC8 479 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 KIAA1468Q9P260 1216 aa24.76■■□□□ 1.55
USP48-205ENST00000421625 PSDA5PKW4 1024 aaPredicted RBP24.75■■□□□ 1.55
USP48-205ENST00000421625 ATL3Q6DD88 541 aa24.75■■□□□ 1.55
USP48-205ENST00000421625 DDX21Q9NR30 783 aaKnown RBP eCLIP24.75■■□□□ 1.55
USP48-205ENST00000421625 USP54Q70EL1 1684 aa24.75■■□□□ 1.55
USP48-205ENST00000421625 NEURL1BA8MQ27 555 aa24.75■■□□□ 1.55
USP48-205ENST00000421625 C1orf141Q5JVX7 400 aa24.75■■□□□ 1.55
USP48-205ENST00000421625 PROSER2Q86WR7 435 aaPredicted RBP24.75■■□□□ 1.55
USP48-205ENST00000421625 NEDD4P46934 1319 aa24.75■■□□□ 1.55
USP48-205ENST00000421625 ABCC6O95255 1503 aa24.74■■□□□ 1.55
USP48-205ENST00000421625 OTUD7BQ6GQQ9 843 aa24.74■■□□□ 1.55
USP48-205ENST00000421625 IRX5P78411 483 aaPredicted RBP24.74■■□□□ 1.55
USP48-205ENST00000421625 TIGD1Q96MW7 591 aa24.74■■□□□ 1.55
USP48-205ENST00000421625 PNMA6AP0CW24 399 aaPredicted RBP24.73■■□□□ 1.55
USP48-205ENST00000421625 GCKRQ14397 625 aa24.73■■□□□ 1.55
USP48-205ENST00000421625 ADALQ6DHV7 355 aa24.73■■□□□ 1.55
USP48-205ENST00000421625 CLIC4Q9Y696 253 aa24.73■■□□□ 1.55
USP48-205ENST00000421625 HMGB1P09429 215 aaKnown RBP24.73■■□□□ 1.55
USP48-205ENST00000421625 MYL6BP14649 208 aa24.73■■□□□ 1.55
USP48-205ENST00000421625 EXOSC10Q01780 885 aaKnown RBP24.73■■□□□ 1.55
USP48-205ENST00000421625 ZRSR1Q15695 479 aaKnown RBP24.73■■□□□ 1.55
USP48-205ENST00000421625 CARMIL3Q8ND23 1372 aa24.73■■□□□ 1.55
USP48-205ENST00000421625 PLA2G4AP47712 749 aa24.72■■□□□ 1.55
USP48-205ENST00000421625 PTPN12Q05209 780 aaKnown RBP24.72■■□□□ 1.55
USP48-205ENST00000421625 HOMER1Q86YM7 354 aa24.72■■□□□ 1.55
USP48-205ENST00000421625 MYD88Q99836 296 aa24.72■■□□□ 1.55
USP48-205ENST00000421625 PDIA3P30101 505 aaKnown RBP24.72■■□□□ 1.55
USP48-205ENST00000421625 HSPA2P54652 639 aa24.72■■□□□ 1.55
USP48-205ENST00000421625 HAUS7Q99871 368 aa24.72■■□□□ 1.55
USP48-205ENST00000421625 RTEL1Q9NZ71 1219 aa24.72■■□□□ 1.55
USP48-205ENST00000421625 FDPSP14324 419 aaKnown RBP24.71■■□□□ 1.55
USP48-205ENST00000421625 RFX5P48382 616 aaPredicted RBP24.71■■□□□ 1.55
USP48-205ENST00000421625 COPRSQ9NQ92 184 aa24.71■■□□□ 1.55
USP48-205ENST00000421625 DNAI1Q9UI46 699 aa24.71■■□□□ 1.55
USP48-205ENST00000421625 AGXT2Q9BYV1 514 aa24.71■■□□□ 1.55
USP48-205ENST00000421625 NCAPHQ15003 741 aa24.71■■□□□ 1.55
USP48-205ENST00000421625 LINC00301Q8NCQ3 95 aa24.71■■□□□ 1.55
USP48-205ENST00000421625 BPIFA3Q9BQP9 254 aa24.71■■□□□ 1.55
USP48-205ENST00000421625 RFX7Q2KHR2 1363 aa24.7■■□□□ 1.55
USP48-205ENST00000421625 CYP2C19P33261 490 aa24.7■■□□□ 1.54
USP48-205ENST00000421625 SF3A1Q15459 793 aaKnown RBP24.7■■□□□ 1.54
USP48-205ENST00000421625 A0A1W2PQ27 194 aa24.7■■□□□ 1.54
USP48-205ENST00000421625 A0A1W2PQ64 194 aa24.7■■□□□ 1.54
USP48-205ENST00000421625 A0A1W2PQD8 194 aa24.7■■□□□ 1.54
USP48-205ENST00000421625 POLR3DP05423 398 aaPredicted RBP24.7■■□□□ 1.54
USP48-205ENST00000421625 LMOD1P29536 600 aaPredicted RBP24.7■■□□□ 1.54
USP48-205ENST00000421625 NEXNQ0ZGT2 675 aa24.7■■□□□ 1.54
USP48-205ENST00000421625 STK38Q15208 465 aa24.7■■□□□ 1.54
USP48-205ENST00000421625 ISM2Q6H9L7 571 aa24.7■■□□□ 1.54
USP48-205ENST00000421625 E7EWF7 191 aa24.69■■□□□ 1.54
USP48-205ENST00000421625 FANCGO15287 622 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms