RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 MYH13Q9UKX3 1938 aa11.82□□□□□ -0.52
RIF1-202ENST00000414861 IRS2Q9Y4H2 1338 aa11.82□□□□□ -0.52
RIF1-202ENST00000414861 TRIM6-TRIM34B2RNG4 842 aa11.82□□□□□ -0.52
RIF1-202ENST00000414861 IFIT1P09914 478 aaKnown RBP11.82□□□□□ -0.52
RIF1-202ENST00000414861 CCDC102BQ68D86 513 aa11.82□□□□□ -0.52
RIF1-202ENST00000414861 PI16Q6UXB8 463 aa11.82□□□□□ -0.52
RIF1-202ENST00000414861 ZNF804BA4D1E1 1349 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 GYG1P46976 350 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 KCNJ4P48050 445 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 BCAMP50895 628 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 TTC39AQ5SRH9 613 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 TXNRD3Q86VQ6 643 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 SP8Q8IXZ3 490 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 PPP1R1BQ9UD71 204 aaPredicted RBP11.81□□□□□ -0.52
RIF1-202ENST00000414861 NSFL1CQ9UNZ2 370 aaKnown RBP11.81□□□□□ -0.52
RIF1-202ENST00000414861 MCAMP43121 646 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 CCDC158Q5M9N0 1113 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 TMC4Q7Z404 712 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 KLHL34Q8N239 644 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 CNKSR1Q969H4 720 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 RILPL2Q969X0 211 aa11.81□□□□□ -0.52
RIF1-202ENST00000414861 DNAJC2Q99543 621 aaKnown RBP11.81□□□□□ -0.52
RIF1-202ENST00000414861 ZNF219Q9P2Y4 722 aaPredicted RBP11.81□□□□□ -0.52
RIF1-202ENST00000414861 COL1A1P02452 1464 aaPredicted RBP11.8□□□□□ -0.52
RIF1-202ENST00000414861 SNED1Q8TER0 1413 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 UFL1O94874 794 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 TBC1D9Q6ZT07 1266 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 HAUS7Q99871 368 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 BACH2Q9BYV9 841 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 POLLQ9UGP5 575 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 WWC3Q9ULE0 1092 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 ARID4AP29374 1257 aaPredicted RBP11.8□□□□□ -0.52
RIF1-202ENST00000414861 FAM84BQ96KN1 310 aaPredicted RBP11.8□□□□□ -0.52
RIF1-202ENST00000414861 SPON1Q9HCB6 807 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 SNRKQ9NRH2 765 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 PODXL2Q9NZ53 605 aa11.8□□□□□ -0.52
RIF1-202ENST00000414861 RASGRF1Q13972 1273 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 TBC1D16Q8TBP0 767 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 C7orf43Q8WVR3 580 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 GGA1Q9UJY5 639 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 IQSEC3Q9UPP2 1182 aaPredicted RBP11.79□□□□□ -0.52
RIF1-202ENST00000414861 LEMD3Q9Y2U8 911 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 MYH7P12883 1935 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 UTRNP46939 3433 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 CHD4Q14839 1912 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 CDC45O75419 566 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 SEC24BO95487 1268 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 CNTROBQ8N137 903 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.79□□□□□ -0.52
RIF1-202ENST00000414861 ANTXR1Q9H6X2 564 aa11.79□□□□□ -0.52
RIF1-202ENST00000414861 GOLIM4O00461 696 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 ZAP70P43403 619 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 TGFB2P61812 414 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 TTLL6Q8N841 843 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 ZNF512BQ96KM6 892 aaPredicted RBP11.78□□□□□ -0.52
RIF1-202ENST00000414861 DOCK2Q92608 1830 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 ATP2B4P23634 1241 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 FKBP4Q02790 459 aaKnown RBP eCLIP11.78□□□□□ -0.52
RIF1-202ENST00000414861 FBXO33Q7Z6M2 555 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 NLGN2Q8NFZ4 835 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 EVI5LQ96CN4 794 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 PAG1Q9NWQ8 432 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 CD2APQ9Y5K6 639 aa11.78□□□□□ -0.52
RIF1-202ENST00000414861 C21orf2O43822 256 aa11.77□□□□□ -0.53
RIF1-202ENST00000414861 CHGBP05060 677 aa11.77□□□□□ -0.53
RIF1-202ENST00000414861 MPNDQ8N594 471 aa11.77□□□□□ -0.53
RIF1-202ENST00000414861 HMG20BQ9P0W2 317 aa11.77□□□□□ -0.53
RIF1-202ENST00000414861 C6orf229H3BNL8 230 aa11.77□□□□□ -0.53
RIF1-202ENST00000414861 UQCRFS1P1P0C7P4 283 aa11.77□□□□□ -0.53
RIF1-202ENST00000414861 CAVIN4Q5BKX8 364 aa11.77□□□□□ -0.53
RIF1-202ENST00000414861 DPP8Q6V1X1 898 aaPredicted RBP11.77□□□□□ -0.53
RIF1-202ENST00000414861 IL25Q9H293 177 aa11.77□□□□□ -0.53
RIF1-202ENST00000414861 MED23Q9ULK4 1368 aa11.76□□□□□ -0.53
RIF1-202ENST00000414861 CHMLP26374 656 aa11.76□□□□□ -0.53
RIF1-202ENST00000414861 C15orf52Q6ZUT6 534 aaKnown RBP11.76□□□□□ -0.53
RIF1-202ENST00000414861 VPS37DQ86XT2 251 aa11.76□□□□□ -0.53
RIF1-202ENST00000414861 FSD1Q9BTV5 496 aa11.76□□□□□ -0.53
RIF1-202ENST00000414861 CYP2E1P05181 493 aaPredicted RBP11.76□□□□□ -0.53
RIF1-202ENST00000414861 HIBADHP31937 336 aaKnown RBP11.76□□□□□ -0.53
RIF1-202ENST00000414861 SPATA5Q8NB90 893 aa11.76□□□□□ -0.53
RIF1-202ENST00000414861 PIM2Q9P1W9 311 aa11.76□□□□□ -0.53
RIF1-202ENST00000414861 SLFNL1Q499Z3 407 aa11.75□□□□□ -0.53
RIF1-202ENST00000414861 KBTBD3Q8NAB2 608 aa11.75□□□□□ -0.53
RIF1-202ENST00000414861 PIH1D3Q9NQM4 214 aaKnown RBP11.75□□□□□ -0.53
RIF1-202ENST00000414861 TSHZ2Q9NRE2 1034 aa11.75□□□□□ -0.53
RIF1-202ENST00000414861 FER1L6Q2WGJ9 1857 aa11.75□□□□□ -0.53
RIF1-202ENST00000414861 TMX4Q9H1E5 349 aaPredicted RBP11.75□□□□□ -0.53
RIF1-202ENST00000414861 ARFGEF1Q9Y6D6 1849 aa11.74□□□□□ -0.53
RIF1-202ENST00000414861 SCN9AQ15858 1988 aa11.74□□□□□ -0.53
RIF1-202ENST00000414861 RIMBP2O15034 1052 aa11.74□□□□□ -0.53
RIF1-202ENST00000414861 FHDC1Q9C0D6 1143 aaPredicted RBP11.74□□□□□ -0.53
RIF1-202ENST00000414861 JAG2Q9Y219 1238 aa11.74□□□□□ -0.53
RIF1-202ENST00000414861 DALRD3Q5D0E6 543 aaKnown RBP11.74□□□□□ -0.53
RIF1-202ENST00000414861 ZNF804AQ7Z570 1209 aa11.74□□□□□ -0.53
RIF1-202ENST00000414861 FAM227BQ96M60 508 aa11.74□□□□□ -0.53
RIF1-202ENST00000414861 GNL3LQ9NVN8 582 aaKnown RBP11.74□□□□□ -0.53
RIF1-202ENST00000414861 MFAP1P55081 439 aaKnown RBP11.73□□□□□ -0.53
RIF1-202ENST00000414861 CCDC93Q567U6 631 aa11.73□□□□□ -0.53
RIF1-202ENST00000414861 RTFDC1Q9BY42 306 aaPredicted RBP11.73□□□□□ -0.53
RIF1-202ENST00000414861 CD209Q9NNX6 404 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms