RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MKRN1Q9UHC7 482 aaKnown RBP24.06■■□□□ 1.44
SF3A1-202ENST00000411423 ZNF609O15014 1411 aa24.06■■□□□ 1.44
SF3A1-202ENST00000411423 TMEM88BA6NKF7 163 aa24.05■■□□□ 1.44
SF3A1-202ENST00000411423 H7C1D1 291 aa24.05■■□□□ 1.44
SF3A1-202ENST00000411423 DLK2Q6UY11 383 aa24.05■■□□□ 1.44
SF3A1-202ENST00000411423 PODNQ7Z5L7 613 aa24.05■■□□□ 1.44
SF3A1-202ENST00000411423 GLIS2Q9BZE0 524 aaPredicted RBP24.05■■□□□ 1.44
SF3A1-202ENST00000411423 LDHAL6AQ6ZMR3 332 aa24.04■■□□□ 1.44
SF3A1-202ENST00000411423 TNNQ9UQP3 1299 aa24.04■■□□□ 1.44
SF3A1-202ENST00000411423 USP17L3A6NCW0 530 aa24.03■■□□□ 1.44
SF3A1-202ENST00000411423 USP17L4A6NCW7 530 aa24.03■■□□□ 1.44
SF3A1-202ENST00000411423 DACT2Q5SW24 774 aa24.03■■□□□ 1.44
SF3A1-202ENST00000411423 RBM26Q5T8P6 1007 aaKnown RBP24.03■■□□□ 1.44
SF3A1-202ENST00000411423 CST9Q5W186 159 aa24.03■■□□□ 1.44
SF3A1-202ENST00000411423 USP17L1Q7RTZ2 530 aa24.03■■□□□ 1.44
SF3A1-202ENST00000411423 COA1Q9GZY4 146 aa24.03■■□□□ 1.44
SF3A1-202ENST00000411423 ASTN2O75129 1339 aaPredicted RBP24.03■■□□□ 1.44
SF3A1-202ENST00000411423 TAF7LQ5H9L4 462 aa24.02■■□□□ 1.44
SF3A1-202ENST00000411423 CNTNAP1P78357 1384 aa24.02■■□□□ 1.44
SF3A1-202ENST00000411423 PLIN1O60240 522 aa24.01■■□□□ 1.43
SF3A1-202ENST00000411423 BCAR3O75815 825 aa24.01■■□□□ 1.43
SF3A1-202ENST00000411423 ZNF280AP59817 542 aaPredicted RBP24.01■■□□□ 1.43
SF3A1-202ENST00000411423 AGBL3Q8NEM8 1001 aa24.01■■□□□ 1.43
SF3A1-202ENST00000411423 KLHDC4Q8TBB5 520 aa24.01■■□□□ 1.43
SF3A1-202ENST00000411423 ZC3H15Q8WU90 426 aaKnown RBP24.01■■□□□ 1.43
SF3A1-202ENST00000411423 CNNM1Q9NRU3 951 aa24.01■■□□□ 1.43
SF3A1-202ENST00000411423 KCNJ4P48050 445 aa24■■□□□ 1.43
SF3A1-202ENST00000411423 KIF4BQ2VIQ3 1234 aa24■■□□□ 1.43
SF3A1-202ENST00000411423 LRRC24Q50LG9 513 aa24■■□□□ 1.43
SF3A1-202ENST00000411423 C15orf52Q6ZUT6 534 aaKnown RBP24■■□□□ 1.43
SF3A1-202ENST00000411423 RIPOR2Q9Y4F9 1068 aa24■■□□□ 1.43
SF3A1-202ENST00000411423 TRPM7Q96QT4 1865 aa24■■□□□ 1.43
SF3A1-202ENST00000411423 API5Q9BZZ5 524 aaKnown RBP23.99■■□□□ 1.43
SF3A1-202ENST00000411423 CD209Q9NNX6 404 aa23.99■■□□□ 1.43
SF3A1-202ENST00000411423 RFX5P48382 616 aaPredicted RBP23.98■■□□□ 1.43
SF3A1-202ENST00000411423 FBXW7Q969H0 707 aa23.98■■□□□ 1.43
SF3A1-202ENST00000411423 STRIP1Q5VSL9 837 aa23.97■■□□□ 1.43
SF3A1-202ENST00000411423 USP48Q86UV5 1035 aa23.97■■□□□ 1.43
SF3A1-202ENST00000411423 VEGFBP49765 207 aa23.96■■□□□ 1.43
SF3A1-202ENST00000411423 GTF2IP78347 998 aa23.96■■□□□ 1.43
SF3A1-202ENST00000411423 POLR2AP24928 1970 aaKnown RBP23.96■■□□□ 1.43
SF3A1-202ENST00000411423 KIF16BQ96L93 1317 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 RASSF10A6NK89 507 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 ADM5C9JUS6 153 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 USP17L8P0C7I0 530 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 TTLL5Q6EMB2 1281 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 CDC37L1Q7L3B6 337 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 ARHGAP45Q92619 1136 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 MEIS3Q99687 375 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 MYOZ2Q9NPC6 264 aa23.95■■□□□ 1.42
SF3A1-202ENST00000411423 CELF2O95319 508 aaKnown RBP23.94■■□□□ 1.42
SF3A1-202ENST00000411423 TRIM27P14373 513 aa23.94■■□□□ 1.42
SF3A1-202ENST00000411423 IL1R1P14778 569 aa23.94■■□□□ 1.42
SF3A1-202ENST00000411423 CERS5Q8N5B7 392 aa23.94■■□□□ 1.42
SF3A1-202ENST00000411423 VGLL2Q8N8G2 317 aa23.94■■□□□ 1.42
SF3A1-202ENST00000411423 GGA3Q9NZ52 723 aa23.94■■□□□ 1.42
SF3A1-202ENST00000411423 ABT1Q9ULW3 272 aaKnown RBP23.94■■□□□ 1.42
SF3A1-202ENST00000411423 SCARF1Q14162 830 aa23.93■■□□□ 1.42
SF3A1-202ENST00000411423 INTS3Q68E01 1043 aaKnown RBP23.93■■□□□ 1.42
SF3A1-202ENST00000411423 SCAF8Q9UPN6 1271 aaKnown RBP23.93■■□□□ 1.42
SF3A1-202ENST00000411423 JAG2Q9Y219 1238 aa23.93■■□□□ 1.42
SF3A1-202ENST00000411423 ZBED9Q6R2W3 1325 aa23.92■■□□□ 1.42
SF3A1-202ENST00000411423 UBTFL1P0CB47 393 aaPredicted RBP23.92■■□□□ 1.42
SF3A1-202ENST00000411423 GYG1P46976 350 aa23.92■■□□□ 1.42
SF3A1-202ENST00000411423 PTPN12Q05209 780 aaKnown RBP23.92■■□□□ 1.42
SF3A1-202ENST00000411423 UBE4AQ14139 1066 aa23.92■■□□□ 1.42
SF3A1-202ENST00000411423 DEFB115Q30KQ5 88 aa23.92■■□□□ 1.42
SF3A1-202ENST00000411423 KRT26Q7Z3Y9 468 aa23.92■■□□□ 1.42
SF3A1-202ENST00000411423 ZNF408Q9H9D4 720 aa23.92■■□□□ 1.42
SF3A1-202ENST00000411423 LRRFIP2Q9Y608 721 aaKnown RBP23.92■■□□□ 1.42
SF3A1-202ENST00000411423 TLL2Q9Y6L7 1015 aa23.92■■□□□ 1.42
SF3A1-202ENST00000411423 MROH5Q6ZUA9 1318 aa23.91■■□□□ 1.42
SF3A1-202ENST00000411423 NBPF9Q3BBW0 867 aa23.91■■□□□ 1.42
SF3A1-202ENST00000411423 ANGEL2Q5VTE6 544 aaKnown RBP23.91■■□□□ 1.42
SF3A1-202ENST00000411423 FRAT1Q92837 279 aaPredicted RBP23.91■■□□□ 1.42
SF3A1-202ENST00000411423 FAM84BQ96KN1 310 aaPredicted RBP23.91■■□□□ 1.42
SF3A1-202ENST00000411423 HSPA1AP0DMV8 641 aaKnown RBP23.9■■□□□ 1.42
SF3A1-202ENST00000411423 HSPA1BP0DMV9 641 aaKnown RBP23.9■■□□□ 1.42
SF3A1-202ENST00000411423 ATF7IPQ6VMQ6 1270 aa23.9■■□□□ 1.42
SF3A1-202ENST00000411423 ZNF804AQ7Z570 1209 aa23.9■■□□□ 1.42
SF3A1-202ENST00000411423 KIAA0825Q8IV33 1275 aa23.9■■□□□ 1.42
SF3A1-202ENST00000411423 MYO3BQ8WXR4 1341 aa23.89■■□□□ 1.42
SF3A1-202ENST00000411423 METTL24Q5JXM2 366 aa23.89■■□□□ 1.41
SF3A1-202ENST00000411423 ATG9AQ7Z3C6 839 aa23.89■■□□□ 1.41
SF3A1-202ENST00000411423 CLUAP1Q96AJ1 413 aa23.89■■□□□ 1.41
SF3A1-202ENST00000411423 DCPSQ96C86 337 aaKnown RBP23.89■■□□□ 1.41
SF3A1-202ENST00000411423 PCDHAC2Q9Y5I4 1007 aa23.89■■□□□ 1.41
SF3A1-202ENST00000411423 CYP4F22Q6NT55 531 aa23.88■■□□□ 1.41
SF3A1-202ENST00000411423 SAPCD2Q86UD0 394 aa23.88■■□□□ 1.41
SF3A1-202ENST00000411423 TDRD7Q8NHU6 1098 aaKnown RBP23.88■■□□□ 1.41
SF3A1-202ENST00000411423 WDR33Q9C0J8 1336 aaKnown RBP23.87■■□□□ 1.41
SF3A1-202ENST00000411423 EYA2O00167 538 aa23.87■■□□□ 1.41
SF3A1-202ENST00000411423 WNT10BO00744 389 aa23.87■■□□□ 1.41
SF3A1-202ENST00000411423 SASH1O94885 1247 aa23.87■■□□□ 1.41
SF3A1-202ENST00000411423 PDE8BO95263 885 aa23.87■■□□□ 1.41
SF3A1-202ENST00000411423 ZBED3Q96IU2 234 aaPredicted RBP23.87■■□□□ 1.41
SF3A1-202ENST00000411423 FGFR2P21802 821 aa23.86■■□□□ 1.41
SF3A1-202ENST00000411423 PA2G4Q9UQ80 394 aaKnown RBP23.86■■□□□ 1.41
SF3A1-202ENST00000411423 THSD7BQ9C0I4 1608 aa23.85■■□□□ 1.41
SF3A1-202ENST00000411423 IPO8O15397 1037 aaKnown RBP23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms