RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 I3L4J1 428 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 ZNF131P52739 623 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 MSANTD4Q8NCY6 345 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 ITSN2Q9NZM3 1697 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 NBPF9Q3BBW0 867 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 C8orf74Q6P047 294 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 PRIM1P49642 420 aaKnown RBP14.53□□□□□ -0.08
COL6A3-206ENST00000409809 MAP3K7CLP57077 242 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 ERMNQ8TAM6 284 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 FERMT2Q96AC1 680 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 IBTKQ9P2D0 1353 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-206ENST00000409809 GOLGA8BA8MQT2 603 aa14.52□□□□□ -0.08
COL6A3-206ENST00000409809 DUSP27Q5VZP5 1158 aa14.52□□□□□ -0.08
COL6A3-206ENST00000409809 TXNDC16Q9P2K2 825 aa14.52□□□□□ -0.08
COL6A3-206ENST00000409809 NUCKS1Q9H1E3 243 aaKnown RBP14.52□□□□□ -0.08
COL6A3-206ENST00000409809 GOLGA8QA0A0J9YX86 632 aa14.52□□□□□ -0.08
COL6A3-206ENST00000409809 GOLGA8OA6NCC3 632 aa14.52□□□□□ -0.08
COL6A3-206ENST00000409809 GOLGA8NF8WBI6 632 aa14.52□□□□□ -0.08
COL6A3-206ENST00000409809 WDHD1O75717 1129 aaPredicted RBP14.52□□□□□ -0.08
COL6A3-206ENST00000409809 CATIPQ7Z7H3 387 aa14.52□□□□□ -0.08
COL6A3-206ENST00000409809 ZSWIM4Q9H7M6 989 aa14.52□□□□□ -0.08
COL6A3-206ENST00000409809 CCDC92Q53HC0 331 aaPredicted RBP14.52□□□□□ -0.09
COL6A3-206ENST00000409809 ANKRD36BQ8N2N9 1353 aa14.52□□□□□ -0.09
COL6A3-206ENST00000409809 FERMT3Q86UX7 667 aa14.52□□□□□ -0.09
COL6A3-206ENST00000409809 TMTC2Q8N394 836 aa14.52□□□□□ -0.09
COL6A3-206ENST00000409809 AQRO60306 1485 aaKnown RBP eCLIP14.52□□□□□ -0.09
COL6A3-206ENST00000409809 EFCAB8A8MWE9 144 aa14.52□□□□□ -0.09
COL6A3-206ENST00000409809 OAS2P29728 719 aaKnown RBP14.52□□□□□ -0.09
COL6A3-206ENST00000409809 PRKAR2BP31323 418 aa14.52□□□□□ -0.09
COL6A3-206ENST00000409809 UBA7P41226 1012 aa14.52□□□□□ -0.09
COL6A3-206ENST00000409809 CYP26C1Q6V0L0 522 aa14.52□□□□□ -0.09
COL6A3-206ENST00000409809 AKR1B15C9JRZ8 316 aaPredicted RBP14.52□□□□□ -0.09
COL6A3-206ENST00000409809 ZNF76P36508 570 aa14.52□□□□□ -0.09
COL6A3-206ENST00000409809 DYNC1I2Q13409 638 aaKnown RBP14.51□□□□□ -0.09
COL6A3-206ENST00000409809 PDCD2Q16342 344 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-206ENST00000409809 CCDC152Q4G0S7 254 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 CENPKQ9BS16 269 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 FAF1Q9UNN5 650 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-206ENST00000409809 ODF2LQ9ULJ1 636 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 COG7P83436 770 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 TTF1Q15361 905 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-206ENST00000409809 CNNM1Q9NRU3 951 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 VIMP08670 466 aaKnown RBP14.51□□□□□ -0.09
COL6A3-206ENST00000409809 FAM135AQ9P2D6 1515 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 RNF40O75150 1001 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 FLOT1O75955 427 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 TTC22Q5TAA0 569 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 VPS52Q8N1B4 723 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 C1orf115Q9H7X2 142 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 KIF14Q15058 1648 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 NCOA1Q15788 1441 aa14.51□□□□□ -0.09
COL6A3-206ENST00000409809 SMIM24O75264 130 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 PRPF40BQ6NWY9 871 aaKnown RBP14.5□□□□□ -0.09
COL6A3-206ENST00000409809 F13A1P00488 732 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 KRT13P13646 458 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 TRAF1Q13077 416 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 NCAPGQ9BPX3 1015 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 PANK2Q9BZ23 570 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 COMMD10Q9Y6G5 202 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 ZC3H15Q8WU90 426 aaKnown RBP14.5□□□□□ -0.09
COL6A3-206ENST00000409809 NUP58Q9BVL2 599 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 RARSP54136 660 aaKnown RBP14.5□□□□□ -0.09
COL6A3-206ENST00000409809 USP48Q86UV5 1035 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 TMEM57Q8N5G2 664 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 STAG1Q8WVM7 1258 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 PTPN23Q9H3S7 1636 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 RIOK3O14730 519 aaKnown RBP14.5□□□□□ -0.09
COL6A3-206ENST00000409809 UBL4BQ8N7F7 174 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 HOMER3Q9NSC5 361 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 CEP126Q9P2H0 1117 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 SDCCAG8Q86SQ7 713 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-206ENST00000409809 ARHGEF2Q92974 986 aaKnown RBP14.5□□□□□ -0.09
COL6A3-206ENST00000409809 IQGAP2Q13576 1575 aa14.5□□□□□ -0.09
COL6A3-206ENST00000409809 POGZQ7Z3K3 1410 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 UBLCP1Q8WVY7 318 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-206ENST00000409809 ARHGAP45Q92619 1136 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 EXOC4Q96A65 974 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 A0A087WUV0 522 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-206ENST00000409809 NUCB1Q02818 461 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 FCHSD1Q86WN1 690 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 SEL1L2Q5TEA6 688 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 GIMAP6Q6P9H5 292 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 SYCE1Q8N0S2 351 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 RUFY3Q7L099 469 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 VSIG1Q86XK7 387 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 RAB17Q9H0T7 212 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 KLHL14Q9P2G3 628 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 LGSNQ5TDP6 509 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 EPSTI1Q96J88 318 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 CCDC51Q96ER9 411 aa14.49□□□□□ -0.09
COL6A3-206ENST00000409809 JRKLQ9Y4A0 524 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 CAPN7Q9Y6W3 813 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 PNMA8AQ86V59 439 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-206ENST00000409809 PPP1R9AQ9ULJ8 1098 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 CCDC170Q8IYT3 715 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 SH3GL3Q99963 347 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 ACTR5Q9H9F9 607 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-206ENST00000409809 SLC52A1Q9NWF4 448 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 TMTC1Q8IUR5 882 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 CPLX3Q8WVH0 158 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms