RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 LGSNQ5TDP6 509 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 RNF10Q8N5U6 811 aaKnown RBP8.87□□□□□ -0.99
SYNE1-210ENST00000409694 ATP2A3Q93084 1043 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 ZHX1Q9UKY1 873 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-210ENST00000409694 EPRSP07814 1512 aaKnown RBP8.87□□□□□ -0.99
SYNE1-210ENST00000409694 GSDMBQ8TAX9 411 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 TRIM14Q14142 442 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 UBLCP1Q8WVY7 318 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-210ENST00000409694 LUC7L3O95232 432 aaKnown RBP8.87□□□□□ -0.99
SYNE1-210ENST00000409694 AFAP1L1Q8TED9 768 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 SPINK5Q9NQ38 1064 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-210ENST00000409694 RRAGBQ5VZM2 374 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 C6orf50Q9HD87 102 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 AGTPBP1Q9UPW5 1226 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 GJB2P29033 226 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 MUM1L1Q5H9M0 696 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 MAP3K7CLP57077 242 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 SEPT8Q92599 483 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 CRNKL1Q9BZJ0 848 aaKnown RBP8.87□□□□□ -0.99
SYNE1-210ENST00000409694 WDR46O15213 610 aaKnown RBP8.86□□□□□ -0.99
SYNE1-210ENST00000409694 MYCNP04198 464 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-210ENST00000409694 ERCC3P19447 782 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 KIF11P52732 1056 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 CLNS1AP54105 237 aaKnown RBP8.86□□□□□ -0.99
SYNE1-210ENST00000409694 POGZQ7Z3K3 1410 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 KCNH5Q8NCM2 988 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 KIFC2Q96AC6 838 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 NAP1L4Q99733 375 aaKnown RBP8.86□□□□□ -0.99
SYNE1-210ENST00000409694 CAMSAP2Q08AD1 1489 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 GOLGA8QA0A0J9YX86 632 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 GOLGA8OA6NCC3 632 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 GOLGA8NF8WBI6 632 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 HS1BP3Q53T59 392 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 CNGA4Q8IV77 575 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 FRMD4BQ9Y2L6 1034 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 ZEB2O60315 1214 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 ZFP91Q96JP5 570 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-210ENST00000409694 SYNJ2O15056 1496 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 RIOK3O14730 519 aaKnown RBP8.86□□□□□ -0.99
SYNE1-210ENST00000409694 SULT6B1Q6IMI4 303 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 CAPZA3Q96KX2 299 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 CCDC42Q96M95 316 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 TDRD9Q8NDG6 1382 aaKnown RBP8.86□□□□□ -0.99
SYNE1-210ENST00000409694 CCDC65Q8IXS2 484 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 CDC5LQ99459 802 aaKnown RBP8.86□□□□□ -0.99
SYNE1-210ENST00000409694 TMOD3Q9NYL9 352 aa8.86□□□□□ -0.99
SYNE1-210ENST00000409694 SYT1P21579 422 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 SKILP12757 684 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 RPL13P26373 211 aaKnown RBP8.85□□□□□ -0.99
SYNE1-210ENST00000409694 ZMAT2Q96NC0 199 aaKnown RBP8.85□□□□□ -0.99
SYNE1-210ENST00000409694 GBP5Q96PP8 586 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 FAM204AQ9H8W3 233 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 PDE1CQ14123 709 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-210ENST00000409694 FERMT3Q86UX7 667 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 CCDC125Q86Z20 511 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 TTC16Q8NEE8 873 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 RAD54L2Q9Y4B4 1467 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 MCM10Q7L590 875 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 MMRN2Q9H8L6 949 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 OGFRQ9NZT2 677 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 CALML3P27482 149 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 NBPF8Q3BBV2 869 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 LIN9Q5TKA1 542 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 SDCCAG3Q96C92 435 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 TSPY2A6NKD2 308 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 MTMR3Q13615 1198 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 KLHL40Q2TBA0 621 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 SPATS2Q86XZ4 545 aaKnown RBP8.85□□□□□ -0.99
SYNE1-210ENST00000409694 ZNF830Q96NB3 372 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-210ENST00000409694 SPC25Q9HBM1 224 aa8.85□□□□□ -0.99
SYNE1-210ENST00000409694 DDX54Q8TDD1 881 aaKnown RBP8.85□□□□□ -0.99
SYNE1-210ENST00000409694 TMEM110-MUSTN1A8MSY1 372 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 KMT5BQ4FZB7 885 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 RUFY4Q6ZNE9 571 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 HS2ST1Q7LGA3 356 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 IFT20Q8IY31 132 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 FAM200AQ8TCP9 573 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 ARHGEF2Q92974 986 aaKnown RBP8.84□□□□□ -0.99
SYNE1-210ENST00000409694 UBE2Q2Q8WVN8 375 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 LRRC9Q6ZRR7 1453 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 RTL1A6NKG5 1358 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 STX10O60499 249 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 CALM1P0DP23 149 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 CALM2P0DP24 149 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 CALM3P0DP25 149 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 NSMCE1Q8WV22 266 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 JPH4Q96JJ6 628 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 TSPY3P0CV98 308 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 TSPY8P0CW00 308 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 WDR44Q5JSH3 913 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 SMARCC2Q8TAQ2 1214 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 UBXN1Q04323 297 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 CCDC25Q86WR0 208 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 TSR2Q969E8 191 aaKnown RBP8.84□□□□□ -0.99
SYNE1-210ENST00000409694 DACT3Q96B18 629 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-210ENST00000409694 RAD50Q92878 1312 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-210ENST00000409694 SPDYE3A6NKU9 549 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 PAXIP1Q6ZW49 1069 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-210ENST00000409694 RUFY3Q7L099 469 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 120.2 ms