RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 CCDC83Q8IWF9 413 aa29.41■■■□□ 2.3
DNMT3A-206ENST00000406659 WDR33Q9C0J8 1336 aaKnown RBP29.4■■■□□ 2.3
DNMT3A-206ENST00000406659 M0R2C6 588 aa29.4■■■□□ 2.3
DNMT3A-206ENST00000406659 FGFR2P21802 821 aa29.4■■■□□ 2.3
DNMT3A-206ENST00000406659 PI16Q6UXB8 463 aa29.4■■■□□ 2.3
DNMT3A-206ENST00000406659 OSBP2Q969R2 916 aa29.4■■■□□ 2.3
DNMT3A-206ENST00000406659 DDX24Q9GZR7 859 aaKnown RBP eCLIP29.4■■■□□ 2.3
DNMT3A-206ENST00000406659 CCNL1Q9UK58 526 aaPredicted RBP29.4■■■□□ 2.3
DNMT3A-206ENST00000406659 LAMB2P55268 1798 aa29.4■■■□□ 2.3
DNMT3A-206ENST00000406659 HSPD1P10809 573 aaKnown RBP29.39■■■□□ 2.3
DNMT3A-206ENST00000406659 TTF1Q15361 905 aaPredicted RBP29.39■■■□□ 2.3
DNMT3A-206ENST00000406659 CCDC102BQ68D86 513 aa29.39■■■□□ 2.3
DNMT3A-206ENST00000406659 TPCN1Q9ULQ1 816 aa29.39■■■□□ 2.3
DNMT3A-206ENST00000406659 ME3Q16798 604 aa29.39■■■□□ 2.29
DNMT3A-206ENST00000406659 COL9A3Q14050 684 aaPredicted RBP29.38■■■□□ 2.29
DNMT3A-206ENST00000406659 ZSCAN25Q6NSZ9 544 aa29.38■■■□□ 2.29
DNMT3A-206ENST00000406659 TCEANC2Q96MN5 208 aa29.38■■■□□ 2.29
DNMT3A-206ENST00000406659 ARID4AP29374 1257 aaPredicted RBP29.37■■■□□ 2.29
DNMT3A-206ENST00000406659 PHKA1P46020 1223 aa29.37■■■□□ 2.29
DNMT3A-206ENST00000406659 ERFEQ4G0M1 354 aa29.37■■■□□ 2.29
DNMT3A-206ENST00000406659 APPBP2Q92624 585 aa29.37■■■□□ 2.29
DNMT3A-206ENST00000406659 NARFQ9UHQ1 456 aa29.37■■■□□ 2.29
DNMT3A-206ENST00000406659 BICDL1Q6ZP65 573 aa29.36■■■□□ 2.29
DNMT3A-206ENST00000406659 CDC5LQ99459 802 aaKnown RBP29.36■■■□□ 2.29
DNMT3A-206ENST00000406659 GNPATO15228 680 aa29.36■■■□□ 2.29
DNMT3A-206ENST00000406659 LMBRD1Q9NUN5 540 aa29.36■■■□□ 2.29
DNMT3A-206ENST00000406659 TRPC5Q9UL62 973 aaPredicted RBP29.36■■■□□ 2.29
DNMT3A-206ENST00000406659 DDX49Q9Y6V7 483 aaKnown RBP29.36■■■□□ 2.29
DNMT3A-206ENST00000406659 HMGB1P09429 215 aaKnown RBP29.35■■■□□ 2.29
DNMT3A-206ENST00000406659 TOB2Q14106 344 aaPredicted RBP29.35■■■□□ 2.29
DNMT3A-206ENST00000406659 SMIM5Q71RC9 77 aa29.35■■■□□ 2.29
DNMT3A-206ENST00000406659 AKAP11Q9UKA4 1901 aa29.35■■■□□ 2.29
DNMT3A-206ENST00000406659 ZPR1O75312 459 aa29.34■■■□□ 2.29
DNMT3A-206ENST00000406659 GTF2E1P29083 439 aaPredicted RBP29.34■■■□□ 2.29
DNMT3A-206ENST00000406659 TBC1D9BQ66K14 1250 aa29.34■■■□□ 2.29
DNMT3A-206ENST00000406659 NECAB1Q8N987 351 aa29.34■■■□□ 2.29
DNMT3A-206ENST00000406659 RTCBQ9Y3I0 505 aaKnown RBP29.34■■■□□ 2.29
DNMT3A-206ENST00000406659 ONECUT3O60422 494 aaPredicted RBP29.34■■■□□ 2.29
DNMT3A-206ENST00000406659 BCL2L12Q9HB09 334 aa29.34■■■□□ 2.29
DNMT3A-206ENST00000406659 CTNNA3Q9UI47 895 aa29.34■■■□□ 2.29
DNMT3A-206ENST00000406659 SCN7AQ01118 1682 aa29.33■■■□□ 2.29
DNMT3A-206ENST00000406659 GJB2P29033 226 aa29.33■■■□□ 2.29
DNMT3A-206ENST00000406659 KLHL40Q2TBA0 621 aa29.33■■■□□ 2.29
DNMT3A-206ENST00000406659 ARAP2Q8WZ64 1704 aa29.33■■■□□ 2.29
DNMT3A-206ENST00000406659 ATRNO75882 1429 aa29.33■■■□□ 2.29
DNMT3A-206ENST00000406659 PRPF40AO75400 957 aaKnown RBP29.32■■■□□ 2.28
DNMT3A-206ENST00000406659 SF3B3Q15393 1217 aaKnown RBP29.32■■■□□ 2.28
DNMT3A-206ENST00000406659 SEPT12Q8IYM1 358 aa29.32■■■□□ 2.28
DNMT3A-206ENST00000406659 NYXQ9GZU5 481 aa29.32■■■□□ 2.28
DNMT3A-206ENST00000406659 PIH1D3Q9NQM4 214 aaKnown RBP29.32■■■□□ 2.28
DNMT3A-206ENST00000406659 MYH7P12883 1935 aa29.32■■■□□ 2.28
DNMT3A-206ENST00000406659 STX6O43752 255 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 L1TD1Q5T7N2 865 aaKnown RBP29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 STOX1Q6ZVD7 989 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 SETDB2Q96T68 719 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 SRP68Q9UHB9 627 aaKnown RBP29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 GOLGA6L3A6NEY3 463 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 SYT1P21579 422 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 ADD2P35612 726 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 CHRNDQ07001 517 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 ST3GAL1Q11201 340 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 SLC9C2Q5TAH2 1124 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 Q6ZUG5 572 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 ANKRD18AQ8IVF6 992 aa29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 PUS7LQ9H0K6 701 aaKnown RBP29.31■■■□□ 2.28
DNMT3A-206ENST00000406659 IDH1O75874 414 aaKnown RBP29.3■■■□□ 2.28
DNMT3A-206ENST00000406659 ZSCAN22P10073 491 aaPredicted RBP29.3■■■□□ 2.28
DNMT3A-206ENST00000406659 SLC10A5Q5PT55 438 aa29.3■■■□□ 2.28
DNMT3A-206ENST00000406659 SNAP23O00161 211 aa29.29■■■□□ 2.28
DNMT3A-206ENST00000406659 DHX32Q7L7V1 743 aaKnown RBP29.29■■■□□ 2.28
DNMT3A-206ENST00000406659 SPATA5Q8NB90 893 aa29.29■■■□□ 2.28
DNMT3A-206ENST00000406659 E7EWF7 191 aa29.29■■■□□ 2.28
DNMT3A-206ENST00000406659 FGD1P98174 961 aa29.29■■■□□ 2.28
DNMT3A-206ENST00000406659 CHAMP1Q96JM3 812 aa29.29■■■□□ 2.28
DNMT3A-206ENST00000406659 C3orf67Q6ZVT6 689 aa29.28■■■□□ 2.28
DNMT3A-206ENST00000406659 GPAA1O43292 621 aa29.27■■■□□ 2.28
DNMT3A-206ENST00000406659 NCLP19338 710 aaKnown RBP29.27■■■□□ 2.28
DNMT3A-206ENST00000406659 UBE3CQ15386 1083 aa29.27■■■□□ 2.28
DNMT3A-206ENST00000406659 NBPF5PQ86XG9 351 aaPredicted RBP29.27■■■□□ 2.28
DNMT3A-206ENST00000406659 SBF2Q86WG5 1849 aa29.27■■■□□ 2.28
DNMT3A-206ENST00000406659 IMMTQ16891 758 aaKnown RBP29.26■■■□□ 2.28
DNMT3A-206ENST00000406659 TTLL5Q6EMB2 1281 aa29.26■■■□□ 2.28
DNMT3A-206ENST00000406659 ARHGEF1Q92888 912 aaKnown RBP29.26■■■□□ 2.28
DNMT3A-206ENST00000406659 LY75O60449 1722 aa29.26■■■□□ 2.27
DNMT3A-206ENST00000406659 STK3Q13188 491 aa29.26■■■□□ 2.27
DNMT3A-206ENST00000406659 A0A0G2JLW4 131 aa29.25■■■□□ 2.27
DNMT3A-206ENST00000406659 FSD2A1L4K1 749 aa29.25■■■□□ 2.27
DNMT3A-206ENST00000406659 PDE6AP16499 860 aa29.25■■■□□ 2.27
DNMT3A-206ENST00000406659 RASGRF1Q13972 1273 aa29.25■■■□□ 2.27
DNMT3A-206ENST00000406659 QTRT2Q9H974 415 aaKnown RBP29.25■■■□□ 2.27
DNMT3A-206ENST00000406659 ZNF532Q9HCE3 1301 aa29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 FOXP2O15409 715 aa29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 FGAP02671 866 aa29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 PDIA4P13667 645 aaKnown RBP29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 BCL11BQ9C0K0 894 aaPredicted RBP29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 BSDC1Q9NW68 430 aaPredicted RBP29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 LAMA4Q16363 1823 aa29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 BCAMP50895 628 aa29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 EXOSC10Q01780 885 aaKnown RBP29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 TPTE2Q6XPS3 522 aa29.24■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms