RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 SEC31BQ9NQW1 1179 aa25.5■■□□□ 1.67
TPM1-208ENST00000404484 TIMM10P62072 90 aa25.49■■□□□ 1.67
TPM1-208ENST00000404484 ANKRD18AQ8IVF6 992 aa25.49■■□□□ 1.67
TPM1-208ENST00000404484 HIP1O00291 1037 aa25.48■■□□□ 1.67
TPM1-208ENST00000404484 PDE8BO95263 885 aa25.48■■□□□ 1.67
TPM1-208ENST00000404484 MAP4K4O95819 1239 aaPredicted RBP25.48■■□□□ 1.67
TPM1-208ENST00000404484 GORABQ5T7V8 394 aa25.48■■□□□ 1.67
TPM1-208ENST00000404484 VGLL2Q8N8G2 317 aa25.48■■□□□ 1.67
TPM1-208ENST00000404484 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.48■■□□□ 1.67
TPM1-208ENST00000404484 BOLA2Q9H3K6 86 aa25.48■■□□□ 1.67
TPM1-208ENST00000404484 PUM3Q15397 648 aaKnown RBP25.48■■□□□ 1.67
TPM1-208ENST00000404484 CCDC158Q5M9N0 1113 aa25.48■■□□□ 1.67
TPM1-208ENST00000404484 SOGA3Q5TF21 947 aa25.48■■□□□ 1.67
TPM1-208ENST00000404484 HAUS7Q99871 368 aa25.47■■□□□ 1.67
TPM1-208ENST00000404484 ESYT1Q9BSJ8 1104 aa25.47■■□□□ 1.67
TPM1-208ENST00000404484 RNF181Q9P0P0 153 aa25.47■■□□□ 1.67
TPM1-208ENST00000404484 CACNA1SQ13698 1873 aa25.47■■□□□ 1.67
TPM1-208ENST00000404484 TICAM2Q86XR7 235 aa25.46■■□□□ 1.67
TPM1-208ENST00000404484 XAGE2Q96GT9 111 aa25.46■■□□□ 1.67
TPM1-208ENST00000404484 RBM25P49756 843 aaKnown RBP25.45■■□□□ 1.66
TPM1-208ENST00000404484 RUFY2Q8WXA3 655 aa25.45■■□□□ 1.66
TPM1-208ENST00000404484 LPIN2Q92539 896 aa25.45■■□□□ 1.66
TPM1-208ENST00000404484 RFX7Q2KHR2 1363 aa25.45■■□□□ 1.66
TPM1-208ENST00000404484 LMNB1P20700 586 aa25.44■■□□□ 1.66
TPM1-208ENST00000404484 CCDC93Q567U6 631 aa25.44■■□□□ 1.66
TPM1-208ENST00000404484 DDX46Q7L014 1031 aaKnown RBP25.44■■□□□ 1.66
TPM1-208ENST00000404484 SLC51AQ86UW1 340 aa25.44■■□□□ 1.66
TPM1-208ENST00000404484 IPO9Q96P70 1041 aaKnown RBP25.44■■□□□ 1.66
TPM1-208ENST00000404484 DIAPH3Q9NSV4 1193 aa25.44■■□□□ 1.66
TPM1-208ENST00000404484 BSDC1Q9NW68 430 aaPredicted RBP25.44■■□□□ 1.66
TPM1-208ENST00000404484 SBF1O95248 1867 aa25.44■■□□□ 1.66
TPM1-208ENST00000404484 SLC5A1P13866 664 aa25.44■■□□□ 1.66
TPM1-208ENST00000404484 TTC39AQ5SRH9 613 aa25.44■■□□□ 1.66
TPM1-208ENST00000404484 TAOK3Q9H2K8 898 aa25.44■■□□□ 1.66
TPM1-208ENST00000404484 SPEF2Q9C093 1822 aa25.43■■□□□ 1.66
TPM1-208ENST00000404484 EPB41L2O43491 1005 aaKnown RBP25.43■■□□□ 1.66
TPM1-208ENST00000404484 PPEF1O14829 653 aaPredicted RBP25.42■■□□□ 1.66
TPM1-208ENST00000404484 IFIT1P09914 478 aaKnown RBP25.42■■□□□ 1.66
TPM1-208ENST00000404484 RTKN2Q8IZC4 609 aa25.42■■□□□ 1.66
TPM1-208ENST00000404484 FSD1Q9BTV5 496 aa25.42■■□□□ 1.66
TPM1-208ENST00000404484 LTBP3Q9NS15 1303 aa25.42■■□□□ 1.66
TPM1-208ENST00000404484 FER1L6Q2WGJ9 1857 aa25.42■■□□□ 1.66
TPM1-208ENST00000404484 ARAP2Q8WZ64 1704 aa25.41■■□□□ 1.66
TPM1-208ENST00000404484 BBOX1O75936 387 aa25.41■■□□□ 1.66
TPM1-208ENST00000404484 FGFR2P21802 821 aa25.41■■□□□ 1.66
TPM1-208ENST00000404484 RPS8P62241 208 aaKnown RBP25.41■■□□□ 1.66
TPM1-208ENST00000404484 ZNF512BQ96KM6 892 aaPredicted RBP25.41■■□□□ 1.66
TPM1-208ENST00000404484 ADORA1P30542 326 aa25.4■■□□□ 1.66
TPM1-208ENST00000404484 CHRNDQ07001 517 aa25.4■■□□□ 1.66
TPM1-208ENST00000404484 GRAPQ13588 217 aa25.4■■□□□ 1.66
TPM1-208ENST00000404484 GRAPLQ8TC17 118 aaPredicted RBP25.4■■□□□ 1.66
TPM1-208ENST00000404484 ZNF526Q8TF50 670 aaPredicted RBP25.4■■□□□ 1.66
TPM1-208ENST00000404484 DNAJC2Q99543 621 aaKnown RBP25.4■■□□□ 1.66
TPM1-208ENST00000404484 CC2D2BQ6DHV5 1058 aa25.39■■□□□ 1.66
TPM1-208ENST00000404484 USP26Q9BXU7 913 aa25.39■■□□□ 1.66
TPM1-208ENST00000404484 ATP6V0A2Q9Y487 856 aa25.39■■□□□ 1.66
TPM1-208ENST00000404484 RAD50Q92878 1312 aa25.39■■□□□ 1.65
TPM1-208ENST00000404484 FKBP4Q02790 459 aaKnown RBP eCLIP25.39■■□□□ 1.65
TPM1-208ENST00000404484 UQCRFS1P1P0C7P4 283 aa25.38■■□□□ 1.65
TPM1-208ENST00000404484 CELF1Q92879 486 aaKnown RBP25.38■■□□□ 1.65
TPM1-208ENST00000404484 PAG1Q9NWQ8 432 aa25.38■■□□□ 1.65
TPM1-208ENST00000404484 SNED1Q8TER0 1413 aa25.37■■□□□ 1.65
TPM1-208ENST00000404484 SGSM2O43147 1006 aa25.37■■□□□ 1.65
TPM1-208ENST00000404484 LRRFIP1Q32MZ4 808 aaKnown RBP25.37■■□□□ 1.65
TPM1-208ENST00000404484 HELBQ8NG08 1087 aaPredicted RBP25.37■■□□□ 1.65
TPM1-208ENST00000404484 ANKRD2Q9GZV1 360 aa25.37■■□□□ 1.65
TPM1-208ENST00000404484 ZNF277Q9NRM2 450 aaPredicted RBP25.37■■□□□ 1.65
TPM1-208ENST00000404484 TAF1P21675 1872 aa25.37■■□□□ 1.65
TPM1-208ENST00000404484 SP8Q8IXZ3 490 aa25.36■■□□□ 1.65
TPM1-208ENST00000404484 KBTBD3Q8NAB2 608 aa25.36■■□□□ 1.65
TPM1-208ENST00000404484 CCDC88AQ3V6T2 1871 aa25.36■■□□□ 1.65
TPM1-208ENST00000404484 MCCP23508 829 aa25.35■■□□□ 1.65
TPM1-208ENST00000404484 UBE4AQ14139 1066 aa25.35■■□□□ 1.65
TPM1-208ENST00000404484 CWC27Q6UX04 472 aaKnown RBP25.35■■□□□ 1.65
TPM1-208ENST00000404484 KIAA1211Q6ZU35 1233 aa25.35■■□□□ 1.65
TPM1-208ENST00000404484 PSMD1Q99460 953 aa25.35■■□□□ 1.65
TPM1-208ENST00000404484 GPBP1L1Q9HC44 474 aaPredicted RBP25.35■■□□□ 1.65
TPM1-208ENST00000404484 ANO2Q9NQ90 1003 aa25.35■■□□□ 1.65
TPM1-208ENST00000404484 MINPP1Q9UNW1 487 aa25.35■■□□□ 1.65
TPM1-208ENST00000404484 TAF5LO75529 589 aa25.35■■□□□ 1.65
TPM1-208ENST00000404484 GRIPAP1Q4V328 841 aa25.35■■□□□ 1.65
TPM1-208ENST00000404484 A0A1B0GUL6 1792 aa25.34■■□□□ 1.65
TPM1-208ENST00000404484 COL4A1P02462 1669 aa25.34■■□□□ 1.65
TPM1-208ENST00000404484 GOLIM4O00461 696 aa25.34■■□□□ 1.65
TPM1-208ENST00000404484 BECN1Q14457 450 aa25.34■■□□□ 1.65
TPM1-208ENST00000404484 TMX4Q9H1E5 349 aaPredicted RBP25.34■■□□□ 1.65
TPM1-208ENST00000404484 ARID4AP29374 1257 aaPredicted RBP25.33■■□□□ 1.65
TPM1-208ENST00000404484 CCDC102BQ68D86 513 aa25.33■■□□□ 1.65
TPM1-208ENST00000404484 DAXXQ9UER7 740 aaPredicted RBP25.33■■□□□ 1.65
TPM1-208ENST00000404484 EDC3Q96F86 508 aaKnown RBP25.32■■□□□ 1.64
TPM1-208ENST00000404484 ZC3H4Q9UPT8 1303 aaKnown RBP25.32■■□□□ 1.64
TPM1-208ENST00000404484 NMIQ13287 307 aaPredicted RBP25.31■■□□□ 1.64
TPM1-208ENST00000404484 TMC4Q7Z404 712 aa25.31■■□□□ 1.64
TPM1-208ENST00000404484 IARSP41252 1262 aaKnown RBP25.31■■□□□ 1.64
TPM1-208ENST00000404484 TTF1Q15361 905 aaPredicted RBP25.31■■□□□ 1.64
TPM1-208ENST00000404484 SNRKQ9NRH2 765 aa25.31■■□□□ 1.64
TPM1-208ENST00000404484 PHKA1P46020 1223 aa25.3■■□□□ 1.64
TPM1-208ENST00000404484 KCNJ4P48050 445 aa25.3■■□□□ 1.64
TPM1-208ENST00000404484 NDUFB9Q9Y6M9 179 aa25.3■■□□□ 1.64
TPM1-208ENST00000404484 MPNDQ8N594 471 aa25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms