RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SMARCC2Q8TAQ2 1214 aa24.56■■□□□ 1.52
CTCF-202ENST00000401394 DENND2AQ9ULE3 1009 aa24.56■■□□□ 1.52
CTCF-202ENST00000401394 UTYO14607 1347 aa24.55■■□□□ 1.52
CTCF-202ENST00000401394 A0A087WZG4 1122 aa24.55■■□□□ 1.52
CTCF-202ENST00000401394 SMC2O95347 1197 aa24.55■■□□□ 1.52
CTCF-202ENST00000401394 THEMISQ8N1K5 641 aaPredicted RBP24.55■■□□□ 1.52
CTCF-202ENST00000401394 CCAR2Q8N163 923 aaKnown RBP24.55■■□□□ 1.52
CTCF-202ENST00000401394 ERCC6LQ2NKX8 1250 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 ANKRD13DQ6ZTN6 518 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 NKX2-3Q8TAU0 364 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 PAXBP1Q9Y5B6 917 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 MED1Q15648 1581 aaPredicted RBP24.54■■□□□ 1.52
CTCF-202ENST00000401394 ERICH4A6NGS2 130 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 PFKFB2O60825 505 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 XPO4Q9C0E2 1151 aaKnown RBP24.54■■□□□ 1.52
CTCF-202ENST00000401394 TMX1Q9H3N1 280 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 IFNKQ9P0W0 207 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 RBM6P78332 1123 aaKnown RBP24.54■■□□□ 1.52
CTCF-202ENST00000401394 ZNF446Q9NWS9 450 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 LTN1O94822 1766 aa24.54■■□□□ 1.52
CTCF-202ENST00000401394 KDM3BQ7LBC6 1761 aa24.53■■□□□ 1.52
CTCF-202ENST00000401394 E4F1Q66K89 784 aaPredicted RBP24.53■■□□□ 1.52
CTCF-202ENST00000401394 SYT10Q6XYQ8 523 aa24.53■■□□□ 1.52
CTCF-202ENST00000401394 DHX32Q7L7V1 743 aaKnown RBP24.53■■□□□ 1.52
CTCF-202ENST00000401394 TMC6Q7Z403 805 aa24.53■■□□□ 1.52
CTCF-202ENST00000401394 ALDH8A1Q9H2A2 487 aaPredicted RBP24.53■■□□□ 1.52
CTCF-202ENST00000401394 HEG1Q9ULI3 1381 aa24.53■■□□□ 1.52
CTCF-202ENST00000401394 E7EWF7 191 aa24.53■■□□□ 1.52
CTCF-202ENST00000401394 PDIA3P30101 505 aaKnown RBP24.53■■□□□ 1.52
CTCF-202ENST00000401394 ARMCX5Q6P1M9 558 aa24.53■■□□□ 1.52
CTCF-202ENST00000401394 METTL22Q9BUU2 404 aaPredicted RBP24.53■■□□□ 1.52
CTCF-202ENST00000401394 EPC1Q9H2F5 836 aa24.53■■□□□ 1.52
CTCF-202ENST00000401394 ZSCAN16Q9H4T2 348 aaPredicted RBP24.53■■□□□ 1.52
CTCF-202ENST00000401394 SLFN14P0C7P3 912 aa24.52■■□□□ 1.52
CTCF-202ENST00000401394 ATP1A3P13637 1013 aa24.52■■□□□ 1.52
CTCF-202ENST00000401394 DDX17Q92841 729 aaKnown RBP24.52■■□□□ 1.52
CTCF-202ENST00000401394 MRFAP1L1Q96HT8 127 aa24.52■■□□□ 1.52
CTCF-202ENST00000401394 AIFM3Q96NN9 605 aa24.52■■□□□ 1.52
CTCF-202ENST00000401394 U3KPZ7 1027 aaPredicted RBP24.52■■□□□ 1.52
CTCF-202ENST00000401394 JCADQ9P266 1359 aa24.52■■□□□ 1.52
CTCF-202ENST00000401394 LRRC24Q50LG9 513 aa24.52■■□□□ 1.52
CTCF-202ENST00000401394 LMOD1P29536 600 aaPredicted RBP24.51■■□□□ 1.51
CTCF-202ENST00000401394 FAM160A1Q05DH4 1040 aa24.51■■□□□ 1.51
CTCF-202ENST00000401394 KRT32Q14532 448 aa24.51■■□□□ 1.51
CTCF-202ENST00000401394 STK11IPQ8N1F8 1099 aa24.51■■□□□ 1.51
CTCF-202ENST00000401394 RXRAP19793 462 aa24.51■■□□□ 1.51
CTCF-202ENST00000401394 MARCKSP29966 332 aaPredicted RBP24.51■■□□□ 1.51
CTCF-202ENST00000401394 FEZ1Q99689 392 aa24.51■■□□□ 1.51
CTCF-202ENST00000401394 SARM1Q6SZW1 724 aa24.51■■□□□ 1.51
CTCF-202ENST00000401394 HAUS7Q99871 368 aa24.51■■□□□ 1.51
CTCF-202ENST00000401394 COPRSQ9NQ92 184 aa24.51■■□□□ 1.51
CTCF-202ENST00000401394 HSPD1P10809 573 aaKnown RBP24.5■■□□□ 1.51
CTCF-202ENST00000401394 ARHGEF25Q86VW2 580 aa24.5■■□□□ 1.51
CTCF-202ENST00000401394 M0R2C6 588 aa24.5■■□□□ 1.51
CTCF-202ENST00000401394 AMOTQ4VCS5 1084 aa24.5■■□□□ 1.51
CTCF-202ENST00000401394 FMR1NBQ8N0W7 255 aaPredicted RBP24.5■■□□□ 1.51
CTCF-202ENST00000401394 PUS3Q9BZE2 481 aaKnown RBP24.5■■□□□ 1.51
CTCF-202ENST00000401394 NLRP2Q9NX02 1062 aa24.5■■□□□ 1.51
CTCF-202ENST00000401394 KIF28PB7ZC32 967 aa24.49■■□□□ 1.51
CTCF-202ENST00000401394 FAM177A1Q8N128 213 aaPredicted RBP24.49■■□□□ 1.51
CTCF-202ENST00000401394 UBE2Q2LH0YL09 131 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 EXOSC10Q01780 885 aaKnown RBP24.48■■□□□ 1.51
CTCF-202ENST00000401394 FKBP4Q02790 459 aaKnown RBP eCLIP24.48■■□□□ 1.51
CTCF-202ENST00000401394 PI16Q6UXB8 463 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 KBTBD3Q8NAB2 608 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 ANO10Q9NW15 660 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 FANCGO15287 622 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 CDC25BP30305 580 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 CEP57L1Q8IYX8 460 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 DPF2Q92785 391 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 PAG1Q9NWQ8 432 aa24.48■■□□□ 1.51
CTCF-202ENST00000401394 ADGRL3Q9HAR2 1447 aa24.47■■□□□ 1.51
CTCF-202ENST00000401394 SF3A1Q15459 793 aaKnown RBP24.47■■□□□ 1.51
CTCF-202ENST00000401394 NEDD4P46934 1319 aa24.47■■□□□ 1.51
CTCF-202ENST00000401394 CARMIL3Q8ND23 1372 aa24.46■■□□□ 1.51
CTCF-202ENST00000401394 PALLDQ8WX93 1383 aa24.46■■□□□ 1.51
CTCF-202ENST00000401394 MAST3O60307 1309 aa24.46■■□□□ 1.51
CTCF-202ENST00000401394 KIF20AO95235 890 aa24.46■■□□□ 1.51
CTCF-202ENST00000401394 LRP10Q7Z4F1 713 aa24.46■■□□□ 1.51
CTCF-202ENST00000401394 OSBP2Q969R2 916 aa24.46■■□□□ 1.51
CTCF-202ENST00000401394 PPP1R13BQ96KQ4 1090 aa24.46■■□□□ 1.51
CTCF-202ENST00000401394 MORC2Q9Y6X9 1032 aaPredicted RBP24.46■■□□□ 1.51
CTCF-202ENST00000401394 NFAT5O94916 1531 aa24.45■■□□□ 1.51
CTCF-202ENST00000401394 NAA16Q6N069 864 aaPredicted RBP24.45■■□□□ 1.51
CTCF-202ENST00000401394 MRPS27Q92552 414 aaKnown RBP24.45■■□□□ 1.51
CTCF-202ENST00000401394 STK38Q15208 465 aa24.45■■□□□ 1.5
CTCF-202ENST00000401394 CABLES1Q8TDN4 633 aa24.45■■□□□ 1.5
CTCF-202ENST00000401394 TRERF1Q96PN7 1200 aa24.45■■□□□ 1.5
CTCF-202ENST00000401394 ATG9AQ7Z3C6 839 aa24.45■■□□□ 1.5
CTCF-202ENST00000401394 HDAC5Q9UQL6 1122 aa24.44■■□□□ 1.5
CTCF-202ENST00000401394 SALL1Q9NSC2 1324 aa24.44■■□□□ 1.5
CTCF-202ENST00000401394 TTLL7Q6ZT98 887 aa24.44■■□□□ 1.5
CTCF-202ENST00000401394 ZNF397Q8NF99 534 aaPredicted RBP24.44■■□□□ 1.5
CTCF-202ENST00000401394 SLC52A2Q9HAB3 445 aa24.44■■□□□ 1.5
CTCF-202ENST00000401394 CHD2O14647 1828 aaKnown RBP24.44■■□□□ 1.5
CTCF-202ENST00000401394 LINC00301Q8NCQ3 95 aa24.43■■□□□ 1.5
CTCF-202ENST00000401394 KIAA1468Q9P260 1216 aa24.43■■□□□ 1.5
CTCF-202ENST00000401394 FOXP2O15409 715 aa24.43■■□□□ 1.5
CTCF-202ENST00000401394 WDHD1O75717 1129 aaPredicted RBP24.43■■□□□ 1.5
CTCF-202ENST00000401394 MAPK8IP2Q13387 824 aaPredicted RBP24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms