RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 SPTLC2O15270 562 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 ALS2CR12Q96Q35 445 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 NSFL1CQ9UNZ2 370 aaKnown RBP20.81■□□□□ 0.92
COL18A1-204ENST00000400337 DISP1Q96F81 1524 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 GOLGA6L7A0A1B0GV03 622 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 FAM89AQ96GI7 184 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 NAPAP54920 295 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 MCM9Q9NXL9 1143 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 RTCBQ9Y3I0 505 aaKnown RBP20.8■□□□□ 0.92
COL18A1-204ENST00000400337 PTPDC1A2A3K4 754 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 GOLGA6L9A6NEM1 432 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 TBCAO75347 108 aaKnown RBP20.8■□□□□ 0.92
COL18A1-204ENST00000400337 XRCC6P12956 609 aaKnown RBP eCLIP20.8■□□□□ 0.923e-6■■■■□ 25.4
COL18A1-204ENST00000400337 GNG11P61952 73 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 RAD50Q92878 1312 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 TMCO5BA8MYB1 307 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 MCM3P25205 808 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 CBX1P83916 185 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 CCDC113Q9H0I3 377 aa20.8■□□□□ 0.92
COL18A1-204ENST00000400337 CPA1P15085 419 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 ORAI2Q96SN7 254 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 TRIM75PA6NK02 468 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 CHL1O00533 1208 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 TIMM10P62072 90 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 AOPEPQ8N6M6 819 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 CTNNBL1Q8WYA6 563 aaPredicted RBP20.79■□□□□ 0.92
COL18A1-204ENST00000400337 LGR6Q9HBX8 967 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 RXRAP19793 462 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 BTG4Q9NY30 223 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 MAST1Q9Y2H9 1570 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 EIF4G3O43432 1585 aaKnown RBP20.79■□□□□ 0.92
COL18A1-204ENST00000400337 ERMNQ8TAM6 284 aa20.79■□□□□ 0.92
COL18A1-204ENST00000400337 CGNQ9P2M7 1197 aaKnown RBP20.79■□□□□ 0.92
COL18A1-204ENST00000400337 NOP2P46087 812 aaKnown RBP20.78■□□□□ 0.92
COL18A1-204ENST00000400337 CCDC186Q7Z3E2 898 aa20.78■□□□□ 0.92
COL18A1-204ENST00000400337 WDHD1O75717 1129 aaPredicted RBP20.78■□□□□ 0.92
COL18A1-204ENST00000400337 CEP135Q66GS9 1140 aa20.78■□□□□ 0.92
COL18A1-204ENST00000400337 PRIM1P49642 420 aaKnown RBP20.78■□□□□ 0.92
COL18A1-204ENST00000400337 JAG2Q9Y219 1238 aa20.78■□□□□ 0.92
COL18A1-204ENST00000400337 KLHDC4Q8TBB5 520 aa20.78■□□□□ 0.92
COL18A1-204ENST00000400337 DHX58Q96C10 678 aa20.78■□□□□ 0.92
COL18A1-204ENST00000400337 INTS4Q96HW7 963 aaKnown RBP20.78■□□□□ 0.92
COL18A1-204ENST00000400337 GSTTP1A0A1W2PQM5 241 aa20.77■□□□□ 0.92
COL18A1-204ENST00000400337 RTL1A6NKG5 1358 aa20.77■□□□□ 0.92
COL18A1-204ENST00000400337 PLBD2Q8NHP8 589 aa20.77■□□□□ 0.92
COL18A1-204ENST00000400337 METTL22Q9BUU2 404 aaPredicted RBP20.77■□□□□ 0.92
COL18A1-204ENST00000400337 ZC3H12CQ9C0D7 883 aaKnown RBP20.77■□□□□ 0.92
COL18A1-204ENST00000400337 GOPCQ9HD26 462 aa20.77■□□□□ 0.92
COL18A1-204ENST00000400337 CALM1P0DP23 149 aa20.77■□□□□ 0.92
COL18A1-204ENST00000400337 CALM2P0DP24 149 aa20.77■□□□□ 0.92
COL18A1-204ENST00000400337 CALM3P0DP25 149 aa20.77■□□□□ 0.92
COL18A1-204ENST00000400337 ZSWIM4Q9H7M6 989 aa20.77■□□□□ 0.92
COL18A1-204ENST00000400337 AKR1B10O60218 316 aa20.77■□□□□ 0.91
COL18A1-204ENST00000400337 BABAM1Q9NWV8 329 aa20.77■□□□□ 0.91
COL18A1-204ENST00000400337 SKILP12757 684 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 KAT6BQ8WYB5 2073 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 IFFO1Q0D2I5 559 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 DNAI2Q9GZS0 605 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 MMRN2Q9H8L6 949 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 ADGRL2O95490 1459 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 OGFOD1Q8N543 542 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 DYDC1Q8WWB3 177 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 RTL9Q8NET4 1388 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 A0A1B0GUL7 405 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 EYA2O00167 538 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 JADE2Q9NQC1 790 aa20.76■□□□□ 0.91
COL18A1-204ENST00000400337 PRPF4BQ13523 1007 aaKnown RBP20.75■□□□□ 0.91
COL18A1-204ENST00000400337 TYRO3Q06418 890 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 CTAGE1Q96RT6 745 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 ASIC1P78348 528 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 CCDC129Q6ZRS4 1044 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 ATP7AQ04656 1500 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 HLTFQ14527 1009 aaKnown RBP eCLIP20.75■□□□□ 0.916e-6■□□□□ 11.2
COL18A1-204ENST00000400337 PPP4R3BQ5MIZ7 849 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 HDAC9Q9UKV0 1011 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 USP19O94966 1318 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 MYCNP04198 464 aaPredicted RBP20.75■□□□□ 0.91
COL18A1-204ENST00000400337 TNNI3KQ59H18 835 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 FPGT-TNNI3KV9GXZ4 949 aa20.75■□□□□ 0.91
COL18A1-204ENST00000400337 DBNDD2Q9BQY9 259 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 C6orf50Q9HD87 102 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 HELLSQ9NRZ9 838 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 POLR3GO15318 223 aaPredicted RBP20.74■□□□□ 0.91
COL18A1-204ENST00000400337 MBD4O95243 580 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 HOXB7P09629 217 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 EZRP15311 586 aaKnown RBP20.74■□□□□ 0.91
COL18A1-204ENST00000400337 SYT1P21579 422 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 DHX37Q8IY37 1157 aaKnown RBP20.74■□□□□ 0.91
COL18A1-204ENST00000400337 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.74■□□□□ 0.915e-8■■■□□ 15.4
COL18A1-204ENST00000400337 LMOD1P29536 600 aaPredicted RBP20.74■□□□□ 0.91
COL18A1-204ENST00000400337 PLCD4Q9BRC7 762 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 CALML3P27482 149 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 SPAG1Q07617 926 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 ZKSCAN3Q9BRR0 538 aa20.74■□□□□ 0.91
COL18A1-204ENST00000400337 NAA15Q9BXJ9 866 aaKnown RBP20.74■□□□□ 0.91
COL18A1-204ENST00000400337 PSMA7O14818 248 aa20.73■□□□□ 0.91
COL18A1-204ENST00000400337 LDHBP07195 334 aaKnown RBP20.73■□□□□ 0.91
COL18A1-204ENST00000400337 ITGA6P23229 1130 aa20.73■□□□□ 0.91
COL18A1-204ENST00000400337 ANKRD2Q9GZV1 360 aa20.73■□□□□ 0.91
COL18A1-204ENST00000400337 KRT2P35908 639 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms