RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 IGKV5-2P06315 115 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 KBTBD3Q8NAB2 608 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 ARHGEF1Q92888 912 aaKnown RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 TBC1D32Q96NH3 1257 aa9.74□□□□□ -0.85
PTPRD-204ENST00000397606 HOOK1Q9UJC3 728 aaKnown RBP9.74□□□□□ -0.85
PTPRD-204ENST00000397606 XRN1Q8IZH2 1706 aaKnown RBP9.73□□□□□ -0.85
PTPRD-204ENST00000397606 KDM4AO75164 1064 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 TRIM28Q13263 835 aaKnown RBP9.73□□□□□ -0.85
PTPRD-204ENST00000397606 ZNF396Q96N95 335 aaPredicted RBP9.73□□□□□ -0.85
PTPRD-204ENST00000397606 MCM5P33992 734 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 UBE4AQ14139 1066 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 PPP4R3BQ5MIZ7 849 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 CCDC73Q6ZRK6 1079 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 FBXO41Q8TF61 875 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 MMP10P09238 476 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 CHRNDQ07001 517 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 LRRC24Q50LG9 513 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 CCDC178Q5BJE1 867 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 CATIPQ7Z7H3 387 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 SPATA5Q8NB90 893 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 ESR2Q92731 530 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 EAF2Q96CJ1 260 aaPredicted RBP9.73□□□□□ -0.85
PTPRD-204ENST00000397606 CCDC171Q6TFL3 1326 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 MYOM1P52179 1685 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 APPBP2Q92624 585 aa9.73□□□□□ -0.85
PTPRD-204ENST00000397606 CIZ1Q9ULV3 898 aaPredicted RBP9.73□□□□□ -0.85
PTPRD-204ENST00000397606 CCDC47Q96A33 483 aaKnown RBP9.72□□□□□ -0.85
PTPRD-204ENST00000397606 TMEM67Q5HYA8 995 aa9.72□□□□□ -0.85
PTPRD-204ENST00000397606 MIGA1Q8NAN2 632 aa9.72□□□□□ -0.85
PTPRD-204ENST00000397606 ISCA1Q9BUE6 129 aa9.72□□□□□ -0.85
PTPRD-204ENST00000397606 EIF5P55010 431 aaKnown RBP9.72□□□□□ -0.85
PTPRD-204ENST00000397606 JAG2Q9Y219 1238 aa9.72□□□□□ -0.85
PTPRD-204ENST00000397606 LEMD3Q9Y2U8 911 aa9.72□□□□□ -0.85
PTPRD-204ENST00000397606 TMTC2Q8N394 836 aa9.72□□□□□ -0.85
PTPRD-204ENST00000397606 XDHP47989 1333 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 CARMIL3Q8ND23 1372 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 HMGN5P82970 282 aaKnown RBP9.71□□□□□ -0.85
PTPRD-204ENST00000397606 JMYQ8N9B5 988 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 TTLL11Q8NHH1 800 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 CDHR2Q9BYE9 1310 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 ATP10DQ9P241 1426 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 ATP2B1P20020 1258 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 EN1Q05925 392 aaPredicted RBP9.71□□□□□ -0.85
PTPRD-204ENST00000397606 DRC7Q8IY82 874 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 NIM1KQ8IY84 436 aa9.71□□□□□ -0.85
PTPRD-204ENST00000397606 SEC63Q9UGP8 760 aaKnown RBP9.71□□□□□ -0.85
PTPRD-204ENST00000397606 GOLGA8BA8MQT2 603 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 PPIP5K2O43314 1243 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 CLSTN1O94985 981 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 KIF5BP33176 963 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 EIF6P56537 245 aaKnown RBP9.71□□□□□ -0.86
PTPRD-204ENST00000397606 TTLL12Q14166 644 aaPredicted RBP9.71□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC83Q8IWF9 413 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 MCM9Q9NXL9 1143 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 ZNF804BA4D1E1 1349 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 PPEF1O14829 653 aaPredicted RBP9.71□□□□□ -0.86
PTPRD-204ENST00000397606 MBD4O95243 580 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 ZAP70P43403 619 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 PICALMQ13492 652 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 KAT14Q9H8E8 782 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 NOL7Q9UMY1 257 aaKnown RBP9.71□□□□□ -0.86
PTPRD-204ENST00000397606 BCS1LQ9Y276 419 aa9.71□□□□□ -0.86
PTPRD-204ENST00000397606 MTX1Q13505 466 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 C8orf34Q49A92 452 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC102BQ68D86 513 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 PUS3Q9BZE2 481 aaKnown RBP9.7□□□□□ -0.86
PTPRD-204ENST00000397606 TNS2Q63HR2 1409 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 CNTNAP4Q9C0A0 1308 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 GOLGA8AA7E2F4 631 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 NPR1P16066 1061 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 LMOD1P29536 600 aaPredicted RBP9.7□□□□□ -0.86
PTPRD-204ENST00000397606 PTPN12Q05209 780 aaKnown RBP9.7□□□□□ -0.86
PTPRD-204ENST00000397606 POLA2Q14181 598 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 TTC6Q86TZ1 520 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC43Q96MW1 224 aaKnown RBP9.7□□□□□ -0.86
PTPRD-204ENST00000397606 SEC31BQ9NQW1 1179 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 PXDNQ92626 1479 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 ADCY9O60503 1353 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 CHD2O14647 1828 aaKnown RBP9.7□□□□□ -0.86
PTPRD-204ENST00000397606 CC2D2BQ6DHV5 1058 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 TSPY3P0CV98 308 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 TSPY8P0CW00 308 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 GRAPQ13588 217 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 STK38Q15208 465 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC96Q2M329 555 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 GRAPLQ8TC17 118 aaPredicted RBP9.7□□□□□ -0.86
PTPRD-204ENST00000397606 FEZ1Q99689 392 aa9.7□□□□□ -0.86
PTPRD-204ENST00000397606 GOLGA6L3A6NEY3 463 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 WDHD1O75717 1129 aaPredicted RBP9.69□□□□□ -0.86
PTPRD-204ENST00000397606 TNNI2P48788 182 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 WTAPQ15007 396 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 TBC1D9BQ66K14 1250 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 TEX11Q8IYF3 940 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 DDX11Q96FC9 970 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 VEZTQ9HBM0 779 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 SEMA3EO15041 775 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 KRT85P78386 507 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 STX8Q9UNK0 236 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 GYG1P46976 350 aa9.69□□□□□ -0.86
PTPRD-204ENST00000397606 ITPK1Q13572 414 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms