RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 TPD52L1Q16890 204 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 RGS22Q8NE09 1264 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 PDE6BP35913 854 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 FAM89AQ96GI7 184 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CNTRLQ7Z7A1 2325 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 PARP4Q9UKK3 1724 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 HOOK2Q96ED9 719 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 WDHD1O75717 1129 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 ITGA6P23229 1130 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 GPTP24298 496 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 UBE4AQ14139 1066 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 UPF3BQ9BZI7 483 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 ANGEL1Q9UNK9 670 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 PIK3C2AO00443 1686 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 NWD1Q149M9 1564 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CYP27B1O15528 508 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 PRIM1P49642 420 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 RPS8P62241 208 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC173Q0VFZ6 552 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 HSP90AA2PQ14568 343 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 RABL6Q3YEC7 729 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CAVIN1Q6NZI2 390 aaKnown RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 BARGINQ6ZT62 677 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 TTC6Q86TZ1 520 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 HAUS7Q99871 368 aa3.94□□□□□ -1.78
VPS13C-203ENST00000395896 CTDP1Q9Y5B0 961 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-203ENST00000395896 KIF2AO00139 706 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 CTSWP56202 376 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 LZTS2Q9BRK4 669 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 USP26Q9BXU7 913 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 LRRC27Q9C0I9 530 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 SMTNL1A8MU46 457 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RNF113AO15541 343 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 GNA11P29992 359 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RCAN1P53805 252 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 NAA16Q6N069 864 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 PRPF40BQ6NWY9 871 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 TEX2Q8IWB9 1127 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC43Q96MW1 224 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 HS1BP3Q53T59 392 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RUFY3Q7L099 469 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 FMNL3Q8IVF7 1028 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 LEMD3Q9Y2U8 911 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 SCN11AQ9UI33 1791 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 PHRF1Q9P1Y6 1649 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 MAP4K4O95819 1239 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 MAP3K11Q16584 847 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RILPL1Q5EBL4 403 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 NOL8Q76FK4 1167 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 SUPT20HQ8NEM7 779 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 FIBPO43427 364 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 PPP1R2P41236 205 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 KRT24Q2M2I5 525 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RC3H1Q5TC82 1133 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 TMX3Q96JJ7 454 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RBM8AQ9Y5S9 174 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC183Q5T5S1 534 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 GIMAP6Q6P9H5 292 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 ZBTB43O43298 467 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 NEMFO60524 1076 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 TUBB4AP04350 444 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 USP5P45974 858 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 POLA2Q14181 598 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RBM28Q9NW13 759 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 SMC2O95347 1197 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 IFIT3O14879 490 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 PLA2G12BQ9BX93 195 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 NUP62CLQ9H1M0 184 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 KAT6AQ92794 2004 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 GNPATO15228 680 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 PRPF40AO75400 957 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 HOXA7P31268 230 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RAB3GAP1Q15042 981 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 CCAR1Q8IX12 1150 aaKnown RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 MYH6P13533 1939 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 MED1Q15648 1581 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-203ENST00000395896 RTL9Q8NET4 1388 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 AMPD3Q01432 767 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 FILIP1LQ4L180 1135 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 G2E3Q7L622 706 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 DNAJC10Q8IXB1 793 aa3.93□□□□□ -1.78
VPS13C-203ENST00000395896 UTYO14607 1347 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 WDR19Q8NEZ3 1342 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 A0A0U1RQG5 324 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 ANXA1P04083 346 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 METAP2P50579 478 aaKnown RBP eCLIP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 WTAPQ15007 396 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 VPS72Q15906 364 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 ZNF512BQ96KM6 892 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 LMO7Q8WWI1 1683 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC70Q6NSX1 233 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 TCP11L1Q9NUJ3 509 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 AXIN2Q9Y2T1 843 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 AFDNP55196 1824 aaKnown RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 GOLGA8BA8MQT2 603 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 ZSCAN22P10073 491 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 NLRP10Q86W26 655 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 ZNF274Q96GC6 653 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 NSFL1CQ9UNZ2 370 aaKnown RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 PALLDQ8WX93 1383 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms