RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 USP17L4A6NCW7 530 aa29.66■■■□□ 2.34
SHMT1-204ENST00000395682 ITGBL1O95965 494 aaPredicted RBP29.66■■■□□ 2.34
SHMT1-204ENST00000395682 USP17L1Q7RTZ2 530 aa29.66■■■□□ 2.34
SHMT1-204ENST00000395682 MEIS3Q99687 375 aa29.66■■■□□ 2.34
SHMT1-204ENST00000395682 RIPOR2Q9Y4F9 1068 aa29.66■■■□□ 2.34
SHMT1-204ENST00000395682 SCN9AQ15858 1988 aa29.66■■■□□ 2.34
SHMT1-204ENST00000395682 ADAMTSL1Q8N6G6 1762 aa29.64■■■□□ 2.34
SHMT1-204ENST00000395682 RSBN1LQ6PCB5 846 aaPredicted RBP29.64■■■□□ 2.34
SHMT1-204ENST00000395682 C15orf52Q6ZUT6 534 aaKnown RBP29.64■■■□□ 2.34
SHMT1-204ENST00000395682 KLHDC4Q8TBB5 520 aa29.64■■■□□ 2.34
SHMT1-204ENST00000395682 LRRFIP2Q9Y608 721 aaKnown RBP29.64■■■□□ 2.34
SHMT1-204ENST00000395682 HIRAP54198 1017 aaPredicted RBP29.63■■■□□ 2.33
SHMT1-204ENST00000395682 LRRC24Q50LG9 513 aa29.63■■■□□ 2.33
SHMT1-204ENST00000395682 MROH5Q6ZUA9 1318 aa29.63■■■□□ 2.33
SHMT1-204ENST00000395682 PASKQ96RG2 1323 aa29.63■■■□□ 2.33
SHMT1-204ENST00000395682 IRS2Q9Y4H2 1338 aa29.63■■■□□ 2.33
SHMT1-204ENST00000395682 GNAI3P08754 354 aa29.62■■■□□ 2.33
SHMT1-204ENST00000395682 SAMD7Q7Z3H4 446 aa29.62■■■□□ 2.33
SHMT1-204ENST00000395682 AGBL3Q8NEM8 1001 aa29.62■■■□□ 2.33
SHMT1-204ENST00000395682 TRPM4Q8TD43 1214 aa29.62■■■□□ 2.33
SHMT1-204ENST00000395682 RFX5P48382 616 aaPredicted RBP29.61■■■□□ 2.33
SHMT1-204ENST00000395682 DNAJC5GQ8N7S2 189 aa29.61■■■□□ 2.33
SHMT1-204ENST00000395682 FBXW7Q969H0 707 aa29.61■■■□□ 2.33
SHMT1-204ENST00000395682 CD209Q9NNX6 404 aa29.61■■■□□ 2.33
SHMT1-204ENST00000395682 UBE4AQ14139 1066 aa29.6■■■□□ 2.33
SHMT1-204ENST00000395682 RBM26Q5T8P6 1007 aaKnown RBP29.6■■■□□ 2.33
SHMT1-204ENST00000395682 TBC1D10BQ4KMP7 808 aaPredicted RBP29.59■■■□□ 2.33
SHMT1-204ENST00000395682 METTL24Q5JXM2 366 aa29.59■■■□□ 2.33
SHMT1-204ENST00000395682 DACT2Q5SW24 774 aa29.59■■■□□ 2.33
SHMT1-204ENST00000395682 STRIP1Q5VSL9 837 aa29.59■■■□□ 2.33
SHMT1-204ENST00000395682 TTLL5Q6EMB2 1281 aa29.59■■■□□ 2.33
SHMT1-204ENST00000395682 ZNF804AQ7Z570 1209 aa29.59■■■□□ 2.33
SHMT1-204ENST00000395682 ZC3H15Q8WU90 426 aaKnown RBP29.59■■■□□ 2.33
SHMT1-204ENST00000395682 GMLQ99445 158 aa29.59■■■□□ 2.33
SHMT1-204ENST00000395682 PGAP2Q9UHJ9 254 aa29.59■■■□□ 2.33
SHMT1-204ENST00000395682 PTPN12Q05209 780 aaKnown RBP29.58■■■□□ 2.33
SHMT1-204ENST00000395682 TMEM57Q8N5G2 664 aa29.58■■■□□ 2.33
SHMT1-204ENST00000395682 MXD3Q9BW11 206 aa29.58■■■□□ 2.33
SHMT1-204ENST00000395682 EGFRP00533 1210 aa29.57■■■□□ 2.32
SHMT1-204ENST00000395682 USP17L8P0C7I0 530 aa29.57■■■□□ 2.32
SHMT1-204ENST00000395682 EYA2O00167 538 aa29.56■■■□□ 2.32
SHMT1-204ENST00000395682 ZNF280AP59817 542 aaPredicted RBP29.56■■■□□ 2.32
SHMT1-204ENST00000395682 GTF2IP78347 998 aa29.56■■■□□ 2.32
SHMT1-204ENST00000395682 A0A1B0GUL6 1792 aa29.55■■■□□ 2.32
SHMT1-204ENST00000395682 PDE8BO95263 885 aa29.55■■■□□ 2.32
SHMT1-204ENST00000395682 FTSJ3Q8IY81 847 aaKnown RBP29.55■■■□□ 2.32
SHMT1-204ENST00000395682 CREBZFQ9NS37 354 aa29.55■■■□□ 2.32
SHMT1-204ENST00000395682 ZNF609O15014 1411 aa29.54■■■□□ 2.32
SHMT1-204ENST00000395682 IL1R1P14778 569 aa29.54■■■□□ 2.32
SHMT1-204ENST00000395682 DZIP1LQ8IYY4 767 aaKnown RBP29.54■■■□□ 2.32
SHMT1-204ENST00000395682 VGLL2Q8N8G2 317 aa29.54■■■□□ 2.32
SHMT1-204ENST00000395682 PSME4Q14997 1843 aa29.54■■■□□ 2.32
SHMT1-204ENST00000395682 KIF4BQ2VIQ3 1234 aa29.53■■■□□ 2.32
SHMT1-204ENST00000395682 FAM84BQ96KN1 310 aaPredicted RBP29.53■■■□□ 2.32
SHMT1-204ENST00000395682 MYO3BQ8WXR4 1341 aa29.52■■■□□ 2.32
SHMT1-204ENST00000395682 TMEM88BA6NKF7 163 aa29.52■■■□□ 2.32
SHMT1-204ENST00000395682 TRAF5O00463 557 aa29.52■■■□□ 2.32
SHMT1-204ENST00000395682 GNAI2P04899 355 aa29.52■■■□□ 2.32
SHMT1-204ENST00000395682 HIBADHP31937 336 aaKnown RBP29.52■■■□□ 2.32
SHMT1-204ENST00000395682 GYG1P46976 350 aa29.52■■■□□ 2.32
SHMT1-204ENST00000395682 FMR1Q06787 632 aaKnown RBP eCLIP29.52■■■□□ 2.32
SHMT1-204ENST00000395682 ATG9AQ7Z3C6 839 aa29.52■■■□□ 2.32
SHMT1-204ENST00000395682 KLRG1Q96E93 195 aa29.52■■■□□ 2.32
SHMT1-204ENST00000395682 SIL1Q9H173 461 aa29.52■■■□□ 2.32
SHMT1-204ENST00000395682 RLBP1P12271 317 aa29.51■■■□□ 2.31
SHMT1-204ENST00000395682 GLIS2Q9BZE0 524 aaPredicted RBP29.51■■■□□ 2.31
SHMT1-204ENST00000395682 FBXO3Q9UK99 471 aa29.51■■■□□ 2.31
SHMT1-204ENST00000395682 CDC37L1Q7L3B6 337 aa29.5■■■□□ 2.31
SHMT1-204ENST00000395682 OGFOD1Q8N543 542 aa29.5■■■□□ 2.31
SHMT1-204ENST00000395682 MYOZ2Q9NPC6 264 aa29.5■■■□□ 2.31
SHMT1-204ENST00000395682 PA2G4Q9UQ80 394 aaKnown RBP29.5■■■□□ 2.31
SHMT1-204ENST00000395682 SRGAP3O43295 1099 aa29.49■■■□□ 2.31
SHMT1-204ENST00000395682 CIAO1O76071 339 aa29.49■■■□□ 2.31
SHMT1-204ENST00000395682 COPRSQ9NQ92 184 aa29.49■■■□□ 2.31
SHMT1-204ENST00000395682 SASH1O94885 1247 aa29.48■■■□□ 2.31
SHMT1-204ENST00000395682 MTX1Q13505 466 aa29.48■■■□□ 2.31
SHMT1-204ENST00000395682 SCARF1Q14162 830 aa29.48■■■□□ 2.31
SHMT1-204ENST00000395682 PUM3Q15397 648 aaKnown RBP29.48■■■□□ 2.31
SHMT1-204ENST00000395682 FBXO33Q7Z6M2 555 aa29.48■■■□□ 2.31
SHMT1-204ENST00000395682 USP48Q86UV5 1035 aa29.48■■■□□ 2.31
SHMT1-204ENST00000395682 VPS37DQ86XT2 251 aa29.48■■■□□ 2.31
SHMT1-204ENST00000395682 ITPRIPQ8IWB1 547 aa29.48■■■□□ 2.31
SHMT1-204ENST00000395682 TDRD7Q8NHU6 1098 aaKnown RBP29.48■■■□□ 2.31
SHMT1-204ENST00000395682 DCPSQ96C86 337 aaKnown RBP29.48■■■□□ 2.31
SHMT1-204ENST00000395682 KIAA0825Q8IV33 1275 aa29.47■■■□□ 2.31
SHMT1-204ENST00000395682 CEP126Q9P2H0 1117 aa29.47■■■□□ 2.31
SHMT1-204ENST00000395682 RCAN3Q9UKA8 241 aa29.47■■■□□ 2.31
SHMT1-204ENST00000395682 JAG2Q9Y219 1238 aa29.47■■■□□ 2.31
SHMT1-204ENST00000395682 FGFR2P21802 821 aa29.46■■■□□ 2.31
SHMT1-204ENST00000395682 CAVIN4Q5BKX8 364 aa29.46■■■□□ 2.31
SHMT1-204ENST00000395682 IFIT1P09914 478 aaKnown RBP29.45■■■□□ 2.31
SHMT1-204ENST00000395682 IL15P40933 162 aaPredicted RBP29.45■■■□□ 2.31
SHMT1-204ENST00000395682 MMP14P50281 582 aa29.45■■■□□ 2.31
SHMT1-204ENST00000395682 CST9Q5W186 159 aa29.45■■■□□ 2.31
SHMT1-204ENST00000395682 KRT26Q7Z3Y9 468 aa29.45■■■□□ 2.31
SHMT1-204ENST00000395682 CERS5Q8N5B7 392 aa29.45■■■□□ 2.31
SHMT1-204ENST00000395682 ASTN2O75129 1339 aaPredicted RBP29.45■■■□□ 2.3
SHMT1-204ENST00000395682 ZBTB7BO15156 539 aaPredicted RBP29.44■■■□□ 2.3
SHMT1-204ENST00000395682 PANK1Q8TE04 598 aa29.44■■■□□ 2.3
SHMT1-204ENST00000395682 MKRN1Q9UHC7 482 aaKnown RBP29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms