RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 SPDYE4A6NLX3 237 aa19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 CCDC57Q2TAC2 916 aa19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 RBM43Q6ZSC3 357 aaKnown RBP19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 ERCC4Q92889 916 aaPredicted RBP19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 KDM4FA0A1W2PPD8 638 aa19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 ARID5BQ14865 1188 aa19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 TSGA10IPQ3SY00 556 aa19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 RABL6Q3YEC7 729 aaPredicted RBP19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 PLA2G4DQ86XP0 818 aa19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 TBC1D2BQ9UPU7 963 aa19.13■□□□□ 0.65
NKX3-1-201ENST00000380871 ZSCAN25Q6NSZ9 544 aa19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 C11orf57Q6ZUT1 292 aaPredicted RBP19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 DCCP43146 1447 aa19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 CHAF1AQ13111 956 aaPredicted RBP19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 CHST3Q7LGC8 479 aa19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 ATG9AQ7Z3C6 839 aa19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 ALDH8A1Q9H2A2 487 aaPredicted RBP19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 IFIT1P09914 478 aaKnown RBP19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 CEP126Q9P2H0 1117 aa19.12■□□□□ 0.65
NKX3-1-201ENST00000380871 A0A1B0GUL7 405 aa19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 TPM3P06753 285 aa19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 CCT2P78371 535 aaKnown RBP19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 GUCY1B3Q02153 619 aa19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 KIF6Q6ZMV9 814 aa19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 CACTINQ8WUQ7 758 aaKnown RBP19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 FBXW7Q969H0 707 aa19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 NCOA5Q9HCD5 579 aaKnown RBP19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 ADORA1P30542 326 aa19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 NAA30Q147X3 362 aaPredicted RBP19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 TDRD7Q8NHU6 1098 aaKnown RBP19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 GOLPH3LQ9H4A5 285 aa19.11■□□□□ 0.65
NKX3-1-201ENST00000380871 APOBRQ0VD83 1088 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 HLFQ16534 295 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 CLIP2Q9UDT6 1046 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 SIPA1L3O60292 1781 aaPredicted RBP19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 WASHC4Q2M389 1173 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 ACSBG1Q96GR2 724 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 MRC1P22897 1456 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 EYA2O00167 538 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 CTDNEP1O95476 244 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 PI16Q6UXB8 463 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 PAG1Q9NWQ8 432 aa19.1■□□□□ 0.65
NKX3-1-201ENST00000380871 NUTM2BA6NNL0 878 aaPredicted RBP19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 NUTM2EB1AL46 878 aaPredicted RBP19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 U2AF2P26368 475 aaKnown RBP eCLIP19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 ADD1P35611 737 aaKnown RBP19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 NUTM2AQ8IVF1 878 aaPredicted RBP19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 SMAP1Q8IYB5 467 aaPredicted RBP19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 PDCL2Q8N4E4 241 aa19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 CCDC191Q8NCU4 936 aa19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 SCN11AQ9UI33 1791 aa19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 COL5A2P05997 1499 aaPredicted RBP19.09■□□□□ 0.65
NKX3-1-201ENST00000380871 KRT32Q14532 448 aa19.08■□□□□ 0.65
NKX3-1-201ENST00000380871 MCMDC2Q4G0Z9 681 aa19.08■□□□□ 0.65
NKX3-1-201ENST00000380871 ZHX1Q9UKY1 873 aaPredicted RBP19.08■□□□□ 0.65
NKX3-1-201ENST00000380871 HAND2P61296 217 aa19.08■□□□□ 0.64
NKX3-1-201ENST00000380871 TCIRG1Q13488 830 aa19.08■□□□□ 0.64
NKX3-1-201ENST00000380871 NSUN7Q8NE18 718 aaKnown RBP19.08■□□□□ 0.64
NKX3-1-201ENST00000380871 HAUS7Q99871 368 aa19.08■□□□□ 0.64
NKX3-1-201ENST00000380871 ATG3Q9NT62 314 aa19.08■□□□□ 0.64
NKX3-1-201ENST00000380871 IL15P40933 162 aaPredicted RBP19.08■□□□□ 0.64
NKX3-1-201ENST00000380871 COL18A1P39060 1754 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 KLHL34Q8N239 644 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 PTPDC1A2A3K4 754 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 USP27XA6NNY8 438 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 STARD3NLO95772 234 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 TTC39AQ5SRH9 613 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 TTLL5Q6EMB2 1281 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 CCAR1Q8IX12 1150 aaKnown RBP19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 KBTBD3Q8NAB2 608 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 HELBQ8NG08 1087 aaPredicted RBP19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 USP28Q96RU2 1077 aa19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 U3KPZ7 1027 aaPredicted RBP19.07■□□□□ 0.64
NKX3-1-201ENST00000380871 PDIA4P13667 645 aaKnown RBP19.06■□□□□ 0.64
NKX3-1-201ENST00000380871 ZSCAN20P17040 1043 aaPredicted RBP19.06■□□□□ 0.64
NKX3-1-201ENST00000380871 IQCB1Q15051 598 aa19.06■□□□□ 0.64
NKX3-1-201ENST00000380871 RAB11FIP4Q86YS3 637 aa19.06■□□□□ 0.64
NKX3-1-201ENST00000380871 CTIFO43310 598 aaKnown RBP19.06■□□□□ 0.64
NKX3-1-201ENST00000380871 TNNT1P13805 278 aa19.06■□□□□ 0.64
NKX3-1-201ENST00000380871 ANKRD7Q92527 254 aa19.06■□□□□ 0.64
NKX3-1-201ENST00000380871 ZBTB1Q9Y2K1 713 aa19.06■□□□□ 0.64
NKX3-1-201ENST00000380871 NCBP1Q09161 790 aaKnown RBP19.05■□□□□ 0.64
NKX3-1-201ENST00000380871 IFIT5Q13325 482 aaKnown RBP19.05■□□□□ 0.64
NKX3-1-201ENST00000380871 SMARCC2Q8TAQ2 1214 aa19.05■□□□□ 0.64
NKX3-1-201ENST00000380871 ZNF592Q92610 1267 aa19.05■□□□□ 0.64
NKX3-1-201ENST00000380871 GPHNQ9NQX3 736 aaPredicted RBP19.05■□□□□ 0.64
NKX3-1-201ENST00000380871 EXOC5O00471 708 aa19.05■□□□□ 0.64
NKX3-1-201ENST00000380871 CNNM1Q9NRU3 951 aa19.05■□□□□ 0.64
NKX3-1-201ENST00000380871 TRMT112Q9UI30 125 aaKnown RBP19.05■□□□□ 0.64
NKX3-1-201ENST00000380871 SNW1Q13573 536 aaKnown RBP19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 SCARF1Q14162 830 aa19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 NKX1-1Q15270 411 aaPredicted RBP19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 METTL24Q5JXM2 366 aa19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 LDHAL6AQ6ZMR3 332 aa19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 CFAP45Q9UL16 551 aa19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 PFKFB2O60825 505 aa19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 ILDR1Q86SU0 546 aaPredicted RBP19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 ZSCAN16Q9H4T2 348 aaPredicted RBP19.04■□□□□ 0.64
NKX3-1-201ENST00000380871 SNAP23O00161 211 aa19.03■□□□□ 0.64
NKX3-1-201ENST00000380871 TPD52L1Q16890 204 aaPredicted RBP19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms