RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 KAZALD1Q96I82 304 aa18.43■□□□□ 0.54
CKAP4-201ENST00000378026 KCND1Q9NSA2 647 aa18.43■□□□□ 0.54
CKAP4-201ENST00000378026 DDX46Q7L014 1031 aaKnown RBP18.43■□□□□ 0.54
CKAP4-201ENST00000378026 ILDR1Q86SU0 546 aaPredicted RBP18.43■□□□□ 0.54
CKAP4-201ENST00000378026 SMARCC2Q8TAQ2 1214 aa18.43■□□□□ 0.54
CKAP4-201ENST00000378026 A0A0G2JLW4 131 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 FANCCQ00597 558 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 CREBRFQ8IUR6 639 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 CLIC4Q9Y696 253 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 SPATA31D1Q6ZQQ2 1576 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 TRIM66O15016 1216 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 NAA16Q6N069 864 aaPredicted RBP18.42■□□□□ 0.54
CKAP4-201ENST00000378026 RAB11FIP4Q86YS3 637 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 DPF2Q92785 391 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 ZSWIM4Q9H7M6 989 aa18.42■□□□□ 0.54
CKAP4-201ENST00000378026 SERPINC1P01008 464 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 SLC3A2P08195 630 aaKnown RBP18.41■□□□□ 0.54
CKAP4-201ENST00000378026 FAM193AP78312 1265 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 SMC1AQ14683 1233 aaKnown RBP18.41■□□□□ 0.54
CKAP4-201ENST00000378026 TSGA10IPQ3SY00 556 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 GRM8O00222 908 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 PFKFB2O60825 505 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 TADA3O75528 432 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 ALDH1L1O75891 902 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 TRIM65Q6PJ69 517 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 CCDC191Q8NCU4 936 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 SLC26A8Q96RN1 970 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 GJB4Q9NTQ9 266 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 DBF4Q9UBU7 674 aaPredicted RBP18.41■□□□□ 0.54
CKAP4-201ENST00000378026 SETD1AO15047 1707 aaKnown RBP18.41■□□□□ 0.54
CKAP4-201ENST00000378026 CRYBG1Q9Y4K1 1723 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 CFAP100Q494V2 611 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 TXLNBQ8N3L3 684 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 LCMT1Q9UIC8 334 aa18.41■□□□□ 0.54
CKAP4-201ENST00000378026 TBC1D8O95759 1140 aa18.4■□□□□ 0.54
CKAP4-201ENST00000378026 NFATC2IPQ8NCF5 419 aa18.4■□□□□ 0.54
CKAP4-201ENST00000378026 SNRKQ9NRH2 765 aa18.4■□□□□ 0.54
CKAP4-201ENST00000378026 LMAN1P49257 510 aa18.4■□□□□ 0.54
CKAP4-201ENST00000378026 ZSCAN26Q16670 478 aa18.4■□□□□ 0.54
CKAP4-201ENST00000378026 KSR2Q6VAB6 950 aa18.4■□□□□ 0.54
CKAP4-201ENST00000378026 UBASH3AP57075 661 aa18.39■□□□□ 0.54
CKAP4-201ENST00000378026 USPL1Q5W0Q7 1092 aa18.39■□□□□ 0.53
CKAP4-201ENST00000378026 RSPH14Q9UHP6 348 aa18.39■□□□□ 0.53
CKAP4-201ENST00000378026 PARP3Q9Y6F1 533 aa18.39■□□□□ 0.53
CKAP4-201ENST00000378026 U3KPZ7 1027 aaPredicted RBP18.39■□□□□ 0.53
CKAP4-201ENST00000378026 GNG11P61952 73 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 SLC20A2Q08357 652 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 GPS2Q13227 327 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 ADALQ6DHV7 355 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 PDILTQ8N807 584 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 BABAM1Q9NWV8 329 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 PHLPP2Q6ZVD8 1323 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 CACNA1FO60840 1977 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 TMEM232C9JQI7 657 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 NCAPHQ15003 741 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 CC2D1AQ6P1N0 951 aaPredicted RBP18.38■□□□□ 0.53
CKAP4-201ENST00000378026 GPHNQ9NQX3 736 aaPredicted RBP18.38■□□□□ 0.53
CKAP4-201ENST00000378026 NEO1Q92859 1461 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 CHD2O14647 1828 aaKnown RBP18.38■□□□□ 0.53
CKAP4-201ENST00000378026 EFCAB8A8MWE9 144 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 ZNF202O95125 648 aa18.38■□□□□ 0.53
CKAP4-201ENST00000378026 MARCKSP29966 332 aaPredicted RBP18.38■□□□□ 0.53
CKAP4-201ENST00000378026 LRRFIP1Q32MZ4 808 aaKnown RBP18.38■□□□□ 0.53
CKAP4-201ENST00000378026 DHX32Q7L7V1 743 aaKnown RBP18.38■□□□□ 0.53
CKAP4-201ENST00000378026 DBNLQ9UJU6 430 aaKnown RBP18.38■□□□□ 0.53
CKAP4-201ENST00000378026 WDR24Q96S15 920 aa18.37■□□□□ 0.53
CKAP4-201ENST00000378026 LLPHQ9BRT6 129 aaKnown RBP18.37■□□□□ 0.53
CKAP4-201ENST00000378026 NLRP12P59046 1061 aa18.37■□□□□ 0.53
CKAP4-201ENST00000378026 REXO1L1PQ8IX06 675 aa18.37■□□□□ 0.53
CKAP4-201ENST00000378026 MCMDC2Q4G0Z9 681 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 ZNF609O15014 1411 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 CASQ1P31415 396 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 TFCP2Q12800 502 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 EPHA10Q5JZY3 1008 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 CCDC158Q5M9N0 1113 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 ABTB2Q8N961 1025 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 LINC00301Q8NCQ3 95 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 SIRT1Q96EB6 747 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 TSPYL1Q9H0U9 437 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 ARFGAP3Q9NP61 516 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 PARD6BQ9BYG5 372 aa18.36■□□□□ 0.53
CKAP4-201ENST00000378026 SPTLC2O15270 562 aa18.35■□□□□ 0.53
CKAP4-201ENST00000378026 TOP1P11387 765 aaKnown RBP18.35■□□□□ 0.53
CKAP4-201ENST00000378026 RIC3Q7Z5B4 369 aa18.35■□□□□ 0.53
CKAP4-201ENST00000378026 DBNDD2Q9BQY9 259 aa18.35■□□□□ 0.53
CKAP4-201ENST00000378026 RASSF4Q9H2L5 321 aa18.35■□□□□ 0.53
CKAP4-201ENST00000378026 NRXN3Q9Y4C0 1643 aa18.35■□□□□ 0.53
CKAP4-201ENST00000378026 PPP2R3AQ06190 1150 aa18.35■□□□□ 0.53
CKAP4-201ENST00000378026 ZNF530Q6P9A1 599 aaPredicted RBP18.35■□□□□ 0.53
CKAP4-201ENST00000378026 VWA3AA6NCI4 1184 aa18.34■□□□□ 0.53
CKAP4-201ENST00000378026 MYO1CO00159 1063 aa18.34■□□□□ 0.53
CKAP4-201ENST00000378026 CCP110O43303 1012 aa18.34■□□□□ 0.53
CKAP4-201ENST00000378026 MYL6BP14649 208 aa18.34■□□□□ 0.53
CKAP4-201ENST00000378026 PDIA3P30101 505 aaKnown RBP18.34■□□□□ 0.53
CKAP4-201ENST00000378026 LINS1Q8NG48 757 aa18.34■□□□□ 0.53
CKAP4-201ENST00000378026 SRRTQ9BXP5 876 aaKnown RBP18.34■□□□□ 0.53
CKAP4-201ENST00000378026 ESF1Q9H501 851 aaKnown RBP18.34■□□□□ 0.53
CKAP4-201ENST00000378026 RTEL1Q9NZ71 1219 aa18.34■□□□□ 0.53
CKAP4-201ENST00000378026 HDAC5Q9UQL6 1122 aa18.34■□□□□ 0.53
CKAP4-201ENST00000378026 PPP2R2CQ9Y2T4 447 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms